Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 27265 | 5' | -53.5 | NC_005841.1 | + | 31775 | 0.66 | 0.718518 |
|
Target: 5'- aCCGcUGCcuGUUGGCAUgCGUgACGGGUa -3' miRNA: 3'- -GGC-AUGucCAACCGUG-GCA-UGUCCAa -5' |
|||||||
| 27265 | 5' | -53.5 | NC_005841.1 | + | 9857 | 0.78 | 0.155436 |
|
Target: 5'- aUCGcGCAGGUcGGCACCGcACAGGUc -3' miRNA: 3'- -GGCaUGUCCAaCCGUGGCaUGUCCAa -5' |
|||||||
| 27265 | 5' | -53.5 | NC_005841.1 | + | 10096 | 0.81 | 0.100668 |
|
Target: 5'- aUCGcGCAGGUcGGCACCGcGCAGGUUg -3' miRNA: 3'- -GGCaUGUCCAaCCGUGGCaUGUCCAA- -5' |
|||||||
| 27265 | 5' | -53.5 | NC_005841.1 | + | 9887 | 0.81 | 0.100668 |
|
Target: 5'- aUCGcGCAGGUcGGCACCGcGCAGGUUg -3' miRNA: 3'- -GGCaUGUCCAaCCGUGGCaUGUCCAA- -5' |
|||||||
| 27265 | 5' | -53.5 | NC_005841.1 | + | 10051 | 0.98 | 0.006103 |
|
Target: 5'- aCCGcGCAGGUUGGCACCGUACAGGUc -3' miRNA: 3'- -GGCaUGUCCAACCGUGGCAUGUCCAa -5' |
|||||||
| 27265 | 5' | -53.5 | NC_005841.1 | + | 9991 | 1 | 0.00462 |
|
Target: 5'- aCCGUACAGGUUGGCACCGcACAGGUUg -3' miRNA: 3'- -GGCAUGUCCAACCGUGGCaUGUCCAA- -5' |
|||||||
| 27265 | 5' | -53.5 | NC_005841.1 | + | 9947 | 1 | 0.004211 |
|
Target: 5'- aCCGcGCAGGUUGGCACCGUACAGGUUg -3' miRNA: 3'- -GGCaUGUCCAACCGUGGCAUGUCCAA- -5' |
|||||||
| 27265 | 5' | -53.5 | NC_005841.1 | + | 10126 | 1.01 | 0.003958 |
|
Target: 5'- aCCGUACAGGUcGGCACCGUACAGGUUg -3' miRNA: 3'- -GGCAUGUCCAaCCGUGGCAUGUCCAA- -5' |
|||||||
| 27265 | 5' | -53.5 | NC_005841.1 | + | 9917 | 1.01 | 0.003958 |
|
Target: 5'- aCCGUACAGGUcGGCACCGUACAGGUUg -3' miRNA: 3'- -GGCAUGUCCAaCCGUGGCAUGUCCAA- -5' |
|||||||
| 27265 | 5' | -53.5 | NC_005841.1 | + | 10021 | 1.08 | 0.001112 |
|
Target: 5'- aCCGUACAGGUUGGCACCGUACAGGUUg -3' miRNA: 3'- -GGCAUGUCCAACCGUGGCAUGUCCAA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home