Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27301 | 3' | -50.6 | NC_005856.1 | + | 50718 | 1.15 | 0.002164 |
Target: 5'- aCCAGCACACCAGCAUCAAGCAAUCGCu -3' miRNA: 3'- -GGUCGUGUGGUCGUAGUUCGUUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 48804 | 0.75 | 0.597925 |
Target: 5'- gUCGGCAUACaGGCAguaugcaAAGCGAUCGCu -3' miRNA: 3'- -GGUCGUGUGgUCGUag-----UUCGUUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 8060 | 0.75 | 0.608894 |
Target: 5'- gCCAGCAUccggGCCAGgGUgGAGCAcccauuUCGCa -3' miRNA: 3'- -GGUCGUG----UGGUCgUAgUUCGUu-----AGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 82827 | 0.74 | 0.65288 |
Target: 5'- gCAGCugGuuGGCAUCAuGC-GUCGCa -3' miRNA: 3'- gGUCGugUggUCGUAGUuCGuUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 90256 | 0.74 | 0.685702 |
Target: 5'- gCCGGgaGCACCAGCcUUggGUAAUgGCg -3' miRNA: 3'- -GGUCg-UGUGGUCGuAGuuCGUUAgCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 85839 | 0.73 | 0.707345 |
Target: 5'- gCGGCAUAaaaAGCAUCuuGCGAUCGUa -3' miRNA: 3'- gGUCGUGUgg-UCGUAGuuCGUUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 64086 | 0.73 | 0.718061 |
Target: 5'- gCCAGCACAgCCAGC-----GCAGUUGCc -3' miRNA: 3'- -GGUCGUGU-GGUCGuaguuCGUUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 86663 | 0.73 | 0.728693 |
Target: 5'- aCGGCACuACCGGCAgUUAAGCcuccAGUUGCc -3' miRNA: 3'- gGUCGUG-UGGUCGU-AGUUCG----UUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 64944 | 0.73 | 0.739228 |
Target: 5'- aCAGCACACaCGGCGggCAAGCuauAUCa- -3' miRNA: 3'- gGUCGUGUG-GUCGUa-GUUCGu--UAGcg -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 75497 | 0.71 | 0.799775 |
Target: 5'- aCCGGCAcCGCCGaCAaCAGGCuguUCGCg -3' miRNA: 3'- -GGUCGU-GUGGUcGUaGUUCGuu-AGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 49763 | 0.71 | 0.809317 |
Target: 5'- aCUGGUuuuaacaaACCAGCAUCAAGUAGcUUGCg -3' miRNA: 3'- -GGUCGug------UGGUCGUAGUUCGUU-AGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 27908 | 0.71 | 0.827834 |
Target: 5'- aCCAGCAgAUCAGCcagguggCGAGCug-CGCc -3' miRNA: 3'- -GGUCGUgUGGUCGua-----GUUCGuuaGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 19473 | 0.71 | 0.836789 |
Target: 5'- uCCAGC-CACCAGC-UC-GGCuuucgaucAUCGCg -3' miRNA: 3'- -GGUCGuGUGGUCGuAGuUCGu-------UAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 57013 | 0.71 | 0.836789 |
Target: 5'- cUCAGaguCACCGGCAUCAAuCGuGUCGCc -3' miRNA: 3'- -GGUCgu-GUGGUCGUAGUUcGU-UAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 11943 | 0.7 | 0.844664 |
Target: 5'- aCCGGCACAaucgUAGUAUUGgccuacacgccauAGCGAUCGCc -3' miRNA: 3'- -GGUCGUGUg---GUCGUAGU-------------UCGUUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 14813 | 0.7 | 0.870371 |
Target: 5'- -uGGCA-ACCAGCucAUCGuAGCGAUCGUg -3' miRNA: 3'- ggUCGUgUGGUCG--UAGU-UCGUUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 27005 | 0.7 | 0.870371 |
Target: 5'- gCGGCGCACCAGUAccgGAGCcGUCa- -3' miRNA: 3'- gGUCGUGUGGUCGUag-UUCGuUAGcg -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 91361 | 0.69 | 0.885711 |
Target: 5'- uCCAGCACugACCAGUuauuuUCAcGCuuUCGUu -3' miRNA: 3'- -GGUCGUG--UGGUCGu----AGUuCGuuAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 2121 | 0.69 | 0.885711 |
Target: 5'- -aGGCA-GCCAGagaaCGAGCGAUCGCu -3' miRNA: 3'- ggUCGUgUGGUCgua-GUUCGUUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 85338 | 0.69 | 0.892995 |
Target: 5'- gCCAGCACACUugaccgcuGUAUCGuggaGGCGGuuaaccaguUCGCg -3' miRNA: 3'- -GGUCGUGUGGu-------CGUAGU----UCGUU---------AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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