miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27301 3' -50.6 NC_005856.1 + 50718 1.15 0.002164
Target:  5'- aCCAGCACACCAGCAUCAAGCAAUCGCu -3'
miRNA:   3'- -GGUCGUGUGGUCGUAGUUCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 48804 0.75 0.597925
Target:  5'- gUCGGCAUACaGGCAguaugcaAAGCGAUCGCu -3'
miRNA:   3'- -GGUCGUGUGgUCGUag-----UUCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 8060 0.75 0.608894
Target:  5'- gCCAGCAUccggGCCAGgGUgGAGCAcccauuUCGCa -3'
miRNA:   3'- -GGUCGUG----UGGUCgUAgUUCGUu-----AGCG- -5'
27301 3' -50.6 NC_005856.1 + 82827 0.74 0.65288
Target:  5'- gCAGCugGuuGGCAUCAuGC-GUCGCa -3'
miRNA:   3'- gGUCGugUggUCGUAGUuCGuUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 90256 0.74 0.685702
Target:  5'- gCCGGgaGCACCAGCcUUggGUAAUgGCg -3'
miRNA:   3'- -GGUCg-UGUGGUCGuAGuuCGUUAgCG- -5'
27301 3' -50.6 NC_005856.1 + 85839 0.73 0.707345
Target:  5'- gCGGCAUAaaaAGCAUCuuGCGAUCGUa -3'
miRNA:   3'- gGUCGUGUgg-UCGUAGuuCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 64086 0.73 0.718061
Target:  5'- gCCAGCACAgCCAGC-----GCAGUUGCc -3'
miRNA:   3'- -GGUCGUGU-GGUCGuaguuCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 86663 0.73 0.728693
Target:  5'- aCGGCACuACCGGCAgUUAAGCcuccAGUUGCc -3'
miRNA:   3'- gGUCGUG-UGGUCGU-AGUUCG----UUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 64944 0.73 0.739228
Target:  5'- aCAGCACACaCGGCGggCAAGCuauAUCa- -3'
miRNA:   3'- gGUCGUGUG-GUCGUa-GUUCGu--UAGcg -5'
27301 3' -50.6 NC_005856.1 + 75497 0.71 0.799775
Target:  5'- aCCGGCAcCGCCGaCAaCAGGCuguUCGCg -3'
miRNA:   3'- -GGUCGU-GUGGUcGUaGUUCGuu-AGCG- -5'
27301 3' -50.6 NC_005856.1 + 49763 0.71 0.809317
Target:  5'- aCUGGUuuuaacaaACCAGCAUCAAGUAGcUUGCg -3'
miRNA:   3'- -GGUCGug------UGGUCGUAGUUCGUU-AGCG- -5'
27301 3' -50.6 NC_005856.1 + 27908 0.71 0.827834
Target:  5'- aCCAGCAgAUCAGCcagguggCGAGCug-CGCc -3'
miRNA:   3'- -GGUCGUgUGGUCGua-----GUUCGuuaGCG- -5'
27301 3' -50.6 NC_005856.1 + 19473 0.71 0.836789
Target:  5'- uCCAGC-CACCAGC-UC-GGCuuucgaucAUCGCg -3'
miRNA:   3'- -GGUCGuGUGGUCGuAGuUCGu-------UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 57013 0.71 0.836789
Target:  5'- cUCAGaguCACCGGCAUCAAuCGuGUCGCc -3'
miRNA:   3'- -GGUCgu-GUGGUCGUAGUUcGU-UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 11943 0.7 0.844664
Target:  5'- aCCGGCACAaucgUAGUAUUGgccuacacgccauAGCGAUCGCc -3'
miRNA:   3'- -GGUCGUGUg---GUCGUAGU-------------UCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 14813 0.7 0.870371
Target:  5'- -uGGCA-ACCAGCucAUCGuAGCGAUCGUg -3'
miRNA:   3'- ggUCGUgUGGUCG--UAGU-UCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 27005 0.7 0.870371
Target:  5'- gCGGCGCACCAGUAccgGAGCcGUCa- -3'
miRNA:   3'- gGUCGUGUGGUCGUag-UUCGuUAGcg -5'
27301 3' -50.6 NC_005856.1 + 91361 0.69 0.885711
Target:  5'- uCCAGCACugACCAGUuauuuUCAcGCuuUCGUu -3'
miRNA:   3'- -GGUCGUG--UGGUCGu----AGUuCGuuAGCG- -5'
27301 3' -50.6 NC_005856.1 + 2121 0.69 0.885711
Target:  5'- -aGGCA-GCCAGagaaCGAGCGAUCGCu -3'
miRNA:   3'- ggUCGUgUGGUCgua-GUUCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 85338 0.69 0.892995
Target:  5'- gCCAGCACACUugaccgcuGUAUCGuggaGGCGGuuaaccaguUCGCg -3'
miRNA:   3'- -GGUCGUGUGGu-------CGUAGU----UCGUU---------AGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.