miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27301 5' -49.7 NC_005856.1 + 50684 1.13 0.003501
Target:  5'- gCCACUGCUGACCUUUGCCGGUUAUACg -3'
miRNA:   3'- -GGUGACGACUGGAAACGGCCAAUAUG- -5'
27301 5' -49.7 NC_005856.1 + 49723 0.77 0.579672
Target:  5'- aCCACUGCUGGCCUUUaCCcGUUAa-- -3'
miRNA:   3'- -GGUGACGACUGGAAAcGGcCAAUaug -5'
27301 5' -49.7 NC_005856.1 + 64561 0.74 0.700915
Target:  5'- gCAC-GCgGACCUguugGCUGGUUAUGCu -3'
miRNA:   3'- gGUGaCGaCUGGAaa--CGGCCAAUAUG- -5'
27301 5' -49.7 NC_005856.1 + 88678 0.7 0.889657
Target:  5'- gCUAUUGCUGugUUaUGCCgucaggaaauGGUUGUGCu -3'
miRNA:   3'- -GGUGACGACugGAaACGG----------CCAAUAUG- -5'
27301 5' -49.7 NC_005856.1 + 86786 0.67 0.968648
Target:  5'- -aACUGgaGGCUUaacUGCCGGUaGUGCc -3'
miRNA:   3'- ggUGACgaCUGGAa--ACGGCCAaUAUG- -5'
27301 5' -49.7 NC_005856.1 + 63982 0.67 0.9774
Target:  5'- gCugUGCUGGCCUuauUUGCUG---AUGCu -3'
miRNA:   3'- gGugACGACUGGA---AACGGCcaaUAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.