miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27336 5' -54.9 NC_005857.1 + 49665 0.66 0.731992
Target:  5'- aGCCCACGGCgGuACUGAugacgauuccaaucuGGAaucguugugcUGGCCGu -3'
miRNA:   3'- -CGGGUGCUGgCcUGACU---------------UCU----------AUCGGU- -5'
27336 5' -54.9 NC_005857.1 + 21592 0.66 0.727734
Target:  5'- cGCCgACaGcACCGGACUGAu--UGGCUc -3'
miRNA:   3'- -CGGgUG-C-UGGCCUGACUucuAUCGGu -5'
27336 5' -54.9 NC_005857.1 + 2963 0.66 0.706227
Target:  5'- cGCCgACGuACuCGGGCUGAAucUGGCg- -3'
miRNA:   3'- -CGGgUGC-UG-GCCUGACUUcuAUCGgu -5'
27336 5' -54.9 NC_005857.1 + 17435 0.67 0.673443
Target:  5'- gGCCagauaACGACCGGcguaaaugccGCUGAccucgaacgAGGUGGUCGa -3'
miRNA:   3'- -CGGg----UGCUGGCC----------UGACU---------UCUAUCGGU- -5'
27336 5' -54.9 NC_005857.1 + 8857 0.67 0.651371
Target:  5'- cGCCCugG-CUGGAgCUGAuuuucuGGcUGGCCGa -3'
miRNA:   3'- -CGGGugCuGGCCU-GACU------UCuAUCGGU- -5'
27336 5' -54.9 NC_005857.1 + 17715 0.68 0.585047
Target:  5'- aGUCCguggACGGCCuGGguGCaGggGAUGGCCAg -3'
miRNA:   3'- -CGGG----UGCUGG-CC--UGaCuuCUAUCGGU- -5'
27336 5' -54.9 NC_005857.1 + 14239 0.69 0.530768
Target:  5'- cGCCaUACGGCaCGcGCUGGcugAGGUGGCCAu -3'
miRNA:   3'- -CGG-GUGCUG-GCcUGACU---UCUAUCGGU- -5'
27336 5' -54.9 NC_005857.1 + 6929 1.11 0.00079
Target:  5'- gGCCCACGACCGGACUGAAGAUAGCCAa -3'
miRNA:   3'- -CGGGUGCUGGCCUGACUUCUAUCGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.