miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27347 5' -52.3 NC_005857.1 + 18978 0.67 0.806302
Target:  5'- cCUGUUGUuUCAGGA-GAUGAaUGCGCg -3'
miRNA:   3'- -GGCGGUAcAGUCCUaCUACUaGCGCG- -5'
27347 5' -52.3 NC_005857.1 + 4368 0.67 0.79654
Target:  5'- -gGCCAUGUucCAGGG-GAUGAUUGaCGa -3'
miRNA:   3'- ggCGGUACA--GUCCUaCUACUAGC-GCg -5'
27347 5' -52.3 NC_005857.1 + 17206 0.68 0.776495
Target:  5'- aCGCUua-UCGGGcgcuggucGAUGAUCGCGCc -3'
miRNA:   3'- gGCGGuacAGUCCua------CUACUAGCGCG- -5'
27347 5' -52.3 NC_005857.1 + 49727 0.73 0.482716
Target:  5'- aCCGCCGUGggcuUUGGGaAUGAugUGGUCGaCGCu -3'
miRNA:   3'- -GGCGGUAC----AGUCC-UACU--ACUAGC-GCG- -5'
27347 5' -52.3 NC_005857.1 + 17566 0.79 0.208941
Target:  5'- aCGCCAUGcagCAGGGaagUGGUGGUCaGCGCc -3'
miRNA:   3'- gGCGGUACa--GUCCU---ACUACUAG-CGCG- -5'
27347 5' -52.3 NC_005857.1 + 22505 1.13 0.001076
Target:  5'- gCCGCCAUGUCAGGAUGAUGAUCGCGCc -3'
miRNA:   3'- -GGCGGUACAGUCCUACUACUAGCGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.