Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27430 | 3' | -58.8 | NC_005869.1 | + | 21728 | 0.66 | 0.398181 |
Target: 5'- cCCACGCCCUCgACaugaccuucgAGGUcgacgCCAUGGa -3' miRNA: 3'- aGGUGCGGGAGgUGg---------UCCA-----GGUACUg -5' |
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27430 | 3' | -58.8 | NC_005869.1 | + | 28535 | 0.66 | 0.388963 |
Target: 5'- cUCC-UGCUCaCCGCCAuGGUCCGccUGGCc -3' miRNA: 3'- -AGGuGCGGGaGGUGGU-CCAGGU--ACUG- -5' |
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27430 | 3' | -58.8 | NC_005869.1 | + | 16488 | 0.66 | 0.388963 |
Target: 5'- cUCaCugGUCC-CCACCgugcAGGUCC-UGGCc -3' miRNA: 3'- -AG-GugCGGGaGGUGG----UCCAGGuACUG- -5' |
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27430 | 3' | -58.8 | NC_005869.1 | + | 9279 | 0.66 | 0.379887 |
Target: 5'- gUCGCGCUCUU--UCAGGUCCugguUGGCg -3' miRNA: 3'- aGGUGCGGGAGguGGUCCAGGu---ACUG- -5' |
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27430 | 3' | -58.8 | NC_005869.1 | + | 14247 | 0.66 | 0.370952 |
Target: 5'- -aCGCGCaaCUUCCGCCuGGgCUAUGACc -3' miRNA: 3'- agGUGCG--GGAGGUGGuCCaGGUACUG- -5' |
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27430 | 3' | -58.8 | NC_005869.1 | + | 31217 | 0.66 | 0.370952 |
Target: 5'- aUCC-CGCUCUggcagcaCACCAGGUCCAc--- -3' miRNA: 3'- -AGGuGCGGGAg------GUGGUCCAGGUacug -5' |
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27430 | 3' | -58.8 | NC_005869.1 | + | 21860 | 0.66 | 0.362163 |
Target: 5'- -gCACGCCCuucUCCGCCGGGaacgCCAc--- -3' miRNA: 3'- agGUGCGGG---AGGUGGUCCa---GGUacug -5' |
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27430 | 3' | -58.8 | NC_005869.1 | + | 25573 | 0.66 | 0.362163 |
Target: 5'- gCCGCGCcacCCUCCGCCuccAGGgcaCCAcccagGACg -3' miRNA: 3'- aGGUGCG---GGAGGUGG---UCCa--GGUa----CUG- -5' |
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27430 | 3' | -58.8 | NC_005869.1 | + | 27189 | 0.67 | 0.353519 |
Target: 5'- cUCGCGCCCUcCCACgAGcUgUAUGACu -3' miRNA: 3'- aGGUGCGGGA-GGUGgUCcAgGUACUG- -5' |
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27430 | 3' | -58.8 | NC_005869.1 | + | 27258 | 0.67 | 0.345022 |
Target: 5'- cUUCAuCGgCCUCCugCGGGagccccucuacgUCUAUGACa -3' miRNA: 3'- -AGGU-GCgGGAGGugGUCC------------AGGUACUG- -5' |
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27430 | 3' | -58.8 | NC_005869.1 | + | 9651 | 0.67 | 0.345022 |
Target: 5'- --gGCGgCCUCCugCAGGaCC-UGGCg -3' miRNA: 3'- aggUGCgGGAGGugGUCCaGGuACUG- -5' |
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27430 | 3' | -58.8 | NC_005869.1 | + | 27365 | 0.67 | 0.336673 |
Target: 5'- aCCGCGCCCUggCCGCCcg--CCGcUGGCa -3' miRNA: 3'- aGGUGCGGGA--GGUGGuccaGGU-ACUG- -5' |
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27430 | 3' | -58.8 | NC_005869.1 | + | 22527 | 0.67 | 0.336673 |
Target: 5'- cUCCuCGCCCUCCccgGCCAGcGcCCGgcgGAg -3' miRNA: 3'- -AGGuGCGGGAGG---UGGUC-CaGGUa--CUg -5' |
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27430 | 3' | -58.8 | NC_005869.1 | + | 25733 | 0.67 | 0.328472 |
Target: 5'- -gCugGCCCgcgCCGCCGGGcCCAc--- -3' miRNA: 3'- agGugCGGGa--GGUGGUCCaGGUacug -5' |
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27430 | 3' | -58.8 | NC_005869.1 | + | 9954 | 0.68 | 0.304761 |
Target: 5'- aCCACGCgCUCgGCCAGG---AUGGCc -3' miRNA: 3'- aGGUGCGgGAGgUGGUCCaggUACUG- -5' |
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27430 | 3' | -58.8 | NC_005869.1 | + | 22460 | 0.68 | 0.289696 |
Target: 5'- uUCCGCGCCCaCCGCCAcG-CCAUcauggaacaGACa -3' miRNA: 3'- -AGGUGCGGGaGGUGGUcCaGGUA---------CUG- -5' |
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27430 | 3' | -58.8 | NC_005869.1 | + | 7116 | 0.68 | 0.282386 |
Target: 5'- cCCugGCUCUCCuucuuccaCAGGUCCuuguUGAg -3' miRNA: 3'- aGGugCGGGAGGug------GUCCAGGu---ACUg -5' |
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27430 | 3' | -58.8 | NC_005869.1 | + | 33446 | 0.68 | 0.275222 |
Target: 5'- gUCGCGCagaUCCACCGGGUCCc---- -3' miRNA: 3'- aGGUGCGgg-AGGUGGUCCAGGuacug -5' |
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27430 | 3' | -58.8 | NC_005869.1 | + | 8816 | 0.69 | 0.261332 |
Target: 5'- gCU-CGUCCUCguCCAGGUCCccGUGGCc -3' miRNA: 3'- aGGuGCGGGAGguGGUCCAGG--UACUG- -5' |
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27430 | 3' | -58.8 | NC_005869.1 | + | 19585 | 0.69 | 0.231556 |
Target: 5'- gUCCAgcagcgcggggauguUGCCCcCCGCCAGGUCCucguaggucagcAUGAa -3' miRNA: 3'- -AGGU---------------GCGGGaGGUGGUCCAGG------------UACUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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