miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27434 3' -53.7 NC_005869.1 + 11428 0.66 0.611093
Target:  5'- gAUGGAggggagC-CGACGGCGGGucCGGGUu -3'
miRNA:   3'- -UACCUa-----GaGUUGUCGCUCuuGCCCGu -5'
27434 3' -53.7 NC_005869.1 + 1925 0.67 0.587813
Target:  5'- aGUGGGUCaucCGGCAGUGGcAGCGGGg- -3'
miRNA:   3'- -UACCUAGa--GUUGUCGCUcUUGCCCgu -5'
27434 3' -53.7 NC_005869.1 + 8387 0.67 0.587813
Target:  5'- -aGGAgg-UAGCAGUGAGcccagaggggcGGCGGGCAc -3'
miRNA:   3'- uaCCUagaGUUGUCGCUC-----------UUGCCCGU- -5'
27434 3' -53.7 NC_005869.1 + 3609 0.67 0.564701
Target:  5'- gGUGGAUCUgAGC-GCGGaGGUGGGCAu -3'
miRNA:   3'- -UACCUAGAgUUGuCGCUcUUGCCCGU- -5'
27434 3' -53.7 NC_005869.1 + 17475 0.67 0.564701
Target:  5'- -cGGggCUaggGGCGGCGugggugcuGGAGCGGGCGg -3'
miRNA:   3'- uaCCuaGAg--UUGUCGC--------UCUUGCCCGU- -5'
27434 3' -53.7 NC_005869.1 + 16647 0.68 0.475374
Target:  5'- cGUGGcgccgcagCUCAgcgcggccGCGGCGcuGGAGCGGGCGg -3'
miRNA:   3'- -UACCua------GAGU--------UGUCGC--UCUUGCCCGU- -5'
27434 3' -53.7 NC_005869.1 + 4608 0.69 0.454123
Target:  5'- gAUGGGUC-CGcggGCGGCG-GcGCGGGCGa -3'
miRNA:   3'- -UACCUAGaGU---UGUCGCuCuUGCCCGU- -5'
27434 3' -53.7 NC_005869.1 + 6588 0.71 0.321608
Target:  5'- -gGGGUCggcgUCGAUGGUgaaGAGGGCGGGCAg -3'
miRNA:   3'- uaCCUAG----AGUUGUCG---CUCUUGCCCGU- -5'
27434 3' -53.7 NC_005869.1 + 16444 0.74 0.22644
Target:  5'- gAUGGGccgcCUCGGCAGcCGAGGGCGGGgGa -3'
miRNA:   3'- -UACCUa---GAGUUGUC-GCUCUUGCCCgU- -5'
27434 3' -53.7 NC_005869.1 + 26362 0.75 0.185809
Target:  5'- -aGGcUCUCAGCAGCGAGAccaGC-GGCAg -3'
miRNA:   3'- uaCCuAGAGUUGUCGCUCU---UGcCCGU- -5'
27434 3' -53.7 NC_005869.1 + 10731 1.07 0.000871
Target:  5'- gAUGGAUCUCAACAGCGAGAACGGGCAg -3'
miRNA:   3'- -UACCUAGAGUUGUCGCUCUUGCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.