Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27449 | 5' | -54.3 | NC_005869.1 | + | 25689 | 0.66 | 0.684621 |
Target: 5'- aGAGGG--GCgg--CGGGCAcUCGCGGu -3' miRNA: 3'- gCUCCCguUGaagaGCCUGU-AGCGCC- -5' |
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27449 | 5' | -54.3 | NC_005869.1 | + | 5550 | 0.66 | 0.673394 |
Target: 5'- uGGGGGCGagcaggACcgUCUCGGagcuguggGCGUCGCu- -3' miRNA: 3'- gCUCCCGU------UGa-AGAGCC--------UGUAGCGcc -5' |
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27449 | 5' | -54.3 | NC_005869.1 | + | 19337 | 0.66 | 0.673394 |
Target: 5'- gGuGGGCGACaaccgcgUgUUGGACAUgGCGa -3' miRNA: 3'- gCuCCCGUUGa------AgAGCCUGUAgCGCc -5' |
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27449 | 5' | -54.3 | NC_005869.1 | + | 8343 | 0.66 | 0.662127 |
Target: 5'- gGGGGGUAGCcugcaGGAgGUCGgGGg -3' miRNA: 3'- gCUCCCGUUGaagagCCUgUAGCgCC- -5' |
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27449 | 5' | -54.3 | NC_005869.1 | + | 6205 | 0.67 | 0.628193 |
Target: 5'- cCGcGGGCGAUggCuUCGGugGU-GCGGg -3' miRNA: 3'- -GCuCCCGUUGaaG-AGCCugUAgCGCC- -5' |
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27449 | 5' | -54.3 | NC_005869.1 | + | 17633 | 0.67 | 0.616874 |
Target: 5'- cCGAGGGCGggggaccgccGCUg--CGGGCGg-GCGGc -3' miRNA: 3'- -GCUCCCGU----------UGAagaGCCUGUagCGCC- -5' |
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27449 | 5' | -54.3 | NC_005869.1 | + | 67 | 0.67 | 0.57184 |
Target: 5'- uGGGGGCGGCggg-CGGugAUUgGUGGa -3' miRNA: 3'- gCUCCCGUUGaagaGCCugUAG-CGCC- -5' |
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27449 | 5' | -54.3 | NC_005869.1 | + | 6883 | 0.67 | 0.57184 |
Target: 5'- cCGAGGuGCGGCgcCUgGGGCcggcuggCGCGGu -3' miRNA: 3'- -GCUCC-CGUUGaaGAgCCUGua-----GCGCC- -5' |
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27449 | 5' | -54.3 | NC_005869.1 | + | 34028 | 0.67 | 0.57184 |
Target: 5'- uGGGGGCGGCggg-CGGugAUUgGUGGa -3' miRNA: 3'- gCUCCCGUUGaagaGCCugUAG-CGCC- -5' |
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27449 | 5' | -54.3 | NC_005869.1 | + | 517 | 0.67 | 0.57184 |
Target: 5'- aGAGuaGUGAC-UCUCGGGCGcugCGCGGa -3' miRNA: 3'- gCUCc-CGUUGaAGAGCCUGUa--GCGCC- -5' |
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27449 | 5' | -54.3 | NC_005869.1 | + | 18798 | 0.68 | 0.549599 |
Target: 5'- gCGGGGGCGGCggCggcagCGGAgGagGUGGu -3' miRNA: 3'- -GCUCCCGUUGaaGa----GCCUgUagCGCC- -5' |
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27449 | 5' | -54.3 | NC_005869.1 | + | 14985 | 0.68 | 0.516772 |
Target: 5'- gCGAGGGCAcgUUCUCgcugauggaGGugAUgGUGGa -3' miRNA: 3'- -GCUCCCGUugAAGAG---------CCugUAgCGCC- -5' |
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27449 | 5' | -54.3 | NC_005869.1 | + | 4600 | 0.69 | 0.453725 |
Target: 5'- aCGAuGGCGAUgggUCcgCGGGCGgcggCGCGGg -3' miRNA: 3'- -GCUcCCGUUGa--AGa-GCCUGUa---GCGCC- -5' |
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27449 | 5' | -54.3 | NC_005869.1 | + | 8749 | 0.7 | 0.440615 |
Target: 5'- --uGGcGCAGgaUCUCGGACAcguccccgcuguuuUCGCGGu -3' miRNA: 3'- gcuCC-CGUUgaAGAGCCUGU--------------AGCGCC- -5' |
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27449 | 5' | -54.3 | NC_005869.1 | + | 10650 | 0.71 | 0.395091 |
Target: 5'- aGGGGGCGACgcgcUCUCGGucgcccucgcCGUCGCu- -3' miRNA: 3'- gCUCCCGUUGa---AGAGCCu---------GUAGCGcc -5' |
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27449 | 5' | -54.3 | NC_005869.1 | + | 8588 | 0.71 | 0.385804 |
Target: 5'- --cGGGCAGCggga-GGugGUCGCGGc -3' miRNA: 3'- gcuCCCGUUGaagagCCugUAGCGCC- -5' |
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27449 | 5' | -54.3 | NC_005869.1 | + | 13119 | 0.73 | 0.278701 |
Target: 5'- gCGAGGGCGGCUcCUCGGuCAgggGCaGGg -3' miRNA: 3'- -GCUCCCGUUGAaGAGCCuGUag-CG-CC- -5' |
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27449 | 5' | -54.3 | NC_005869.1 | + | 14125 | 1.11 | 0.000632 |
Target: 5'- cCGAGGGCAACUUCUCGGACAUCGCGGu -3' miRNA: 3'- -GCUCCCGUUGAAGAGCCUGUAGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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