miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27461 3' -54.1 NC_005869.1 + 7930 0.66 0.601107
Target:  5'- gGAAGGgCacGAGCUGCUuucCGAAgcGGCCg -3'
miRNA:   3'- -CUUUCgGaaCUCGACGA---GCUU--CCGGa -5'
27461 3' -54.1 NC_005869.1 + 24401 0.66 0.601107
Target:  5'- aGGAGGCCgcccccGGCgcaGCcgCGGAGGCCg -3'
miRNA:   3'- -CUUUCGGaac---UCGa--CGa-GCUUCCGGa -5'
27461 3' -54.1 NC_005869.1 + 7752 0.66 0.566224
Target:  5'- -cGGGCCUgcaGGGCgUGC-CGcAGGGCCUu -3'
miRNA:   3'- cuUUCGGAa--CUCG-ACGaGC-UUCCGGA- -5'
27461 3' -54.1 NC_005869.1 + 8555 0.67 0.498323
Target:  5'- cGGAGGCCggcacgcggGGGCuccUGCUCGAGcGCCg -3'
miRNA:   3'- -CUUUCGGaa-------CUCG---ACGAGCUUcCGGa -5'
27461 3' -54.1 NC_005869.1 + 2024 0.68 0.465742
Target:  5'- uGGAAGCgagcGGGCgcagGCUCGAAgGGCCg -3'
miRNA:   3'- -CUUUCGgaa-CUCGa---CGAGCUU-CCGGa -5'
27461 3' -54.1 NC_005869.1 + 9740 0.69 0.414038
Target:  5'- ---cGUCUUGAGCUGC-CGGAuGGCg- -3'
miRNA:   3'- cuuuCGGAACUCGACGaGCUU-CCGga -5'
27461 3' -54.1 NC_005869.1 + 16705 0.7 0.366019
Target:  5'- --cGGCCgcgcUGAGCUGCggcgccaCGAcGGCCUg -3'
miRNA:   3'- cuuUCGGa---ACUCGACGa------GCUuCCGGA- -5'
27461 3' -54.1 NC_005869.1 + 23159 0.73 0.232827
Target:  5'- -cAGGCCUUcGAGCaGCUCaaggcuuuccaGAAGGCCUg -3'
miRNA:   3'- cuUUCGGAA-CUCGaCGAG-----------CUUCCGGA- -5'
27461 3' -54.1 NC_005869.1 + 10814 0.74 0.198848
Target:  5'- --uGGCCUcucgcuUGAGCUgcacccgugggugccGCUCGggGGCCg -3'
miRNA:   3'- cuuUCGGA------ACUCGA---------------CGAGCuuCCGGa -5'
27461 3' -54.1 NC_005869.1 + 5343 0.76 0.142849
Target:  5'- --cGGUCUgGGGCUGCUCGguGGCCa -3'
miRNA:   3'- cuuUCGGAaCUCGACGAGCuuCCGGa -5'
27461 3' -54.1 NC_005869.1 + 5092 0.8 0.078237
Target:  5'- cGAAGGCCUUGAGggGCUUGA-GGCCc -3'
miRNA:   3'- -CUUUCGGAACUCgaCGAGCUuCCGGa -5'
27461 3' -54.1 NC_005869.1 + 23099 1.08 0.00062
Target:  5'- gGAAAGCCUUGAGCUGCUCGAAGGCCUg -3'
miRNA:   3'- -CUUUCGGAACUCGACGAGCUUCCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.