miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27487 5' -52.7 NC_005872.1 + 14923 0.66 0.680898
Target:  5'- cUACGccAGCCaGCGCGGccaauaucgcuauuGCGGCCa -3'
miRNA:   3'- cGUGUuuUCGGcCGUGCUuu------------CGCCGG- -5'
27487 5' -52.7 NC_005872.1 + 5609 0.66 0.656332
Target:  5'- aGCACAccauaaucaAGGGCgccaCGGCACGuAAGUGuguGCCg -3'
miRNA:   3'- -CGUGU---------UUUCG----GCCGUGCuUUCGC---CGG- -5'
27487 5' -52.7 NC_005872.1 + 18683 0.67 0.597596
Target:  5'- cCACGAcAGCCGGUA--GAGGC-GCCa -3'
miRNA:   3'- cGUGUUuUCGGCCGUgcUUUCGcCGG- -5'
27487 5' -52.7 NC_005872.1 + 10365 0.67 0.597596
Target:  5'- gGCGUAGAauaGGCaaaGGCAUGguGGUGGCUg -3'
miRNA:   3'- -CGUGUUU---UCGg--CCGUGCuuUCGCCGG- -5'
27487 5' -52.7 NC_005872.1 + 7660 0.69 0.494748
Target:  5'- gGCugAGGAGaaGGCGCGuaa--GGCCg -3'
miRNA:   3'- -CGugUUUUCggCCGUGCuuucgCCGG- -5'
27487 5' -52.7 NC_005872.1 + 1652 0.69 0.472926
Target:  5'- gGCGCuuAGGuuGGCugGucuGGCGaCCa -3'
miRNA:   3'- -CGUGuuUUCggCCGugCuu-UCGCcGG- -5'
27487 5' -52.7 NC_005872.1 + 3257 0.69 0.466474
Target:  5'- uCACGAGuuGCCgGGCACGccccgggugccguggGGGGCGGCa -3'
miRNA:   3'- cGUGUUUu-CGG-CCGUGC---------------UUUCGCCGg -5'
27487 5' -52.7 NC_005872.1 + 26993 0.7 0.43081
Target:  5'- cGCACuugguGCCGcGCACGGAaaauggGGaggaGGCCg -3'
miRNA:   3'- -CGUGuuuu-CGGC-CGUGCUU------UCg---CCGG- -5'
27487 5' -52.7 NC_005872.1 + 15063 0.72 0.310583
Target:  5'- gGCACGGAgguuaAGCCuaaGCACGuaauGGCGGCUu -3'
miRNA:   3'- -CGUGUUU-----UCGGc--CGUGCuu--UCGCCGG- -5'
27487 5' -52.7 NC_005872.1 + 13841 0.75 0.203329
Target:  5'- gGCACuu-GGCUGGCGCGGcuaugugggccacGGCGGCUa -3'
miRNA:   3'- -CGUGuuuUCGGCCGUGCUu------------UCGCCGG- -5'
27487 5' -52.7 NC_005872.1 + 6365 0.76 0.188753
Target:  5'- cCACGAAauuAGCCGGCACGGcacagaaauuGgGGCCa -3'
miRNA:   3'- cGUGUUU---UCGGCCGUGCUuu--------CgCCGG- -5'
27487 5' -52.7 NC_005872.1 + 11225 1.15 0.00028
Target:  5'- uGCACAAAAGCCGGCACGAAAGCGGCCa -3'
miRNA:   3'- -CGUGUUUUCGGCCGUGCUUUCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.