miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27489 5' -50.7 NC_005872.1 + 4299 0.66 0.797497
Target:  5'- uGGCUuguuGGCUCuAGUGGCAccuCCAguuuagcuuuucgaaACACGGu -3'
miRNA:   3'- -CCGA----UCGAG-UUACUGUc--GGU---------------UGUGCC- -5'
27489 5' -50.7 NC_005872.1 + 25098 0.66 0.793291
Target:  5'- aGGCUAgGCUUGAUGGCua-CggUugGGa -3'
miRNA:   3'- -CCGAU-CGAGUUACUGucgGuuGugCC- -5'
27489 5' -50.7 NC_005872.1 + 2985 0.66 0.790115
Target:  5'- uGGCUAGCcagacggaaagaacUaCAgugucuggGUGAgGGCUGACGCGGu -3'
miRNA:   3'- -CCGAUCG--------------A-GU--------UACUgUCGGUUGUGCC- -5'
27489 5' -50.7 NC_005872.1 + 13674 0.66 0.782639
Target:  5'- aGGCacAGCcgCAAcGGCAcccGCCAACACGa -3'
miRNA:   3'- -CCGa-UCGa-GUUaCUGU---CGGUUGUGCc -5'
27489 5' -50.7 NC_005872.1 + 20667 0.67 0.703757
Target:  5'- cGGCaUAGC-CAcaucuuuggugAUGACuuuGUCGGCACGGc -3'
miRNA:   3'- -CCG-AUCGaGU-----------UACUGu--CGGUUGUGCC- -5'
27489 5' -50.7 NC_005872.1 + 22757 0.68 0.668431
Target:  5'- cGGCUcAGCUCAcgGACAucauauuucaCCGGCACa- -3'
miRNA:   3'- -CCGA-UCGAGUuaCUGUc---------GGUUGUGcc -5'
27489 5' -50.7 NC_005872.1 + 16085 0.69 0.608926
Target:  5'- cGGCUAgGCUguuuaGAUGACAGCCu-UACGu -3'
miRNA:   3'- -CCGAU-CGAg----UUACUGUCGGuuGUGCc -5'
27489 5' -50.7 NC_005872.1 + 23685 0.7 0.561663
Target:  5'- aGGCUAGCUUuau--CGGCUAugAUGGc -3'
miRNA:   3'- -CCGAUCGAGuuacuGUCGGUugUGCC- -5'
27489 5' -50.7 NC_005872.1 + 8388 0.73 0.37845
Target:  5'- -aCUAGCguaaAAaGACAGCCAACACGa -3'
miRNA:   3'- ccGAUCGag--UUaCUGUCGGUUGUGCc -5'
27489 5' -50.7 NC_005872.1 + 13847 0.74 0.323988
Target:  5'- uGGCUGGCgcggCuAUGugGGCCAcgGCGGc -3'
miRNA:   3'- -CCGAUCGa---GuUACugUCGGUugUGCC- -5'
27489 5' -50.7 NC_005872.1 + 13849 1.13 0.000663
Target:  5'- aGGCUAGCUCAAUGACAGCCAACACGGc -3'
miRNA:   3'- -CCGAUCGAGUUACUGUCGGUUGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.