miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27496 3' -51.4 NC_005872.1 + 16863 0.66 0.660964
Target:  5'- -------aGCCCAGCcucgcCCGCGCCAAa -3'
miRNA:   3'- uuuuugcaCGGGUUGu----GGUGCGGUUa -5'
27496 3' -51.4 NC_005872.1 + 27954 0.66 0.660964
Target:  5'- cAAAAugGUGCUUAAggucgaaauaaGCCGCGCCAc- -3'
miRNA:   3'- -UUUUugCACGGGUUg----------UGGUGCGGUua -5'
27496 3' -51.4 NC_005872.1 + 9591 0.66 0.685135
Target:  5'- uAAAGCGagagGUCCuccGgACCACGCCGAg -3'
miRNA:   3'- uUUUUGCa---CGGGu--UgUGGUGCGGUUa -5'
27496 3' -51.4 NC_005872.1 + 13900 0.68 0.540249
Target:  5'- ----cCGUgGCCCAcauaGCCGCGCCAGc -3'
miRNA:   3'- uuuuuGCA-CGGGUug--UGGUGCGGUUa -5'
27496 3' -51.4 NC_005872.1 + 23192 0.68 0.552106
Target:  5'- uAAAGCGggagGUCCuccGgACCACGCCGAg -3'
miRNA:   3'- uUUUUGCa---CGGGu--UgUGGUGCGGUUa -5'
27496 3' -51.4 NC_005872.1 + 18761 0.68 0.576042
Target:  5'- -------aGCCCGACGCCACaGUCAAa -3'
miRNA:   3'- uuuuugcaCGGGUUGUGGUG-CGGUUa -5'
27496 3' -51.4 NC_005872.1 + 11038 0.75 0.229651
Target:  5'- gGGAGGCGUGUCCAugucaagcccauAgGCCACGCCGu- -3'
miRNA:   3'- -UUUUUGCACGGGU------------UgUGGUGCGGUua -5'
27496 3' -51.4 NC_005872.1 + 26359 0.91 0.017179
Target:  5'- gAAAAACGUGCCCAACA-CACGCCAAUg -3'
miRNA:   3'- -UUUUUGCACGGGUUGUgGUGCGGUUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.