miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27543 3' -46.9 NC_005881.1 + 8552 0.66 0.999964
Target:  5'- uCAUUGGCgUGAUguugucaagcAGGAUGAUGaGGUUa- -3'
miRNA:   3'- -GUAACCG-ACUA----------UCCUAUUAC-CUAGgu -5'
27543 3' -46.9 NC_005881.1 + 94309 0.66 0.999963
Target:  5'- ---aGGCUG-UGGGAUGuauagccGUGGAgcgugCCAa -3'
miRNA:   3'- guaaCCGACuAUCCUAU-------UACCUa----GGU- -5'
27543 3' -46.9 NC_005881.1 + 175322 0.67 0.999916
Target:  5'- gAUUuGCUGG-AGGucuUAAUGGAUCCu -3'
miRNA:   3'- gUAAcCGACUaUCCu--AUUACCUAGGu -5'
27543 3' -46.9 NC_005881.1 + 7715 0.67 0.999916
Target:  5'- gAUUuGCUGG-AGGucuUAAUGGAUCCu -3'
miRNA:   3'- gUAAcCGACUaUCCu--AUUACCUAGGu -5'
27543 3' -46.9 NC_005881.1 + 139986 0.73 0.97912
Target:  5'- uUAUUGGCUGGgcaGGGAuucUAuuaauagauuuugGUGGAUCCAu -3'
miRNA:   3'- -GUAACCGACUa--UCCU---AU-------------UACCUAGGU- -5'
27543 3' -46.9 NC_005881.1 + 140256 1.09 0.026534
Target:  5'- uCAUUGGCUGAUAGGAUAAUGGAUCCAc -3'
miRNA:   3'- -GUAACCGACUAUCCUAUUACCUAGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.