miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 3' -52.8 NC_005887.1 + 14527 0.66 0.76172
Target:  5'- uGCAGGcgcGGCCGuCGGCggcg-CGUCGAu -3'
miRNA:   3'- -CGUCC---UCGGU-GCUGacaaaGCAGCUu -5'
28012 3' -52.8 NC_005887.1 + 26449 0.66 0.76172
Target:  5'- cGCAGGucGGCCA--GCUGcg-CGUCGAGc -3'
miRNA:   3'- -CGUCC--UCGGUgcUGACaaaGCAGCUU- -5'
28012 3' -52.8 NC_005887.1 + 1468 0.66 0.759586
Target:  5'- aGCAGGAGCC-CGACgccgacggCGUgCGGc -3'
miRNA:   3'- -CGUCCUCGGuGCUGacaaa---GCA-GCUu -5'
28012 3' -52.8 NC_005887.1 + 5990 0.66 0.750995
Target:  5'- uCAGGAGCaCGCGcucCUGUcccccUCGUCGGc -3'
miRNA:   3'- cGUCCUCG-GUGCu--GACAa----AGCAGCUu -5'
28012 3' -52.8 NC_005887.1 + 8693 0.67 0.718083
Target:  5'- uGCAGGGcccggcgauccGCCGCGGCgGUaagcgcUUCGUCGc- -3'
miRNA:   3'- -CGUCCU-----------CGGUGCUGaCA------AAGCAGCuu -5'
28012 3' -52.8 NC_005887.1 + 40708 0.67 0.684339
Target:  5'- gGCAGGAGCCgaucgaagACGACUucgagGUcgccgcccgCGUCGAGg -3'
miRNA:   3'- -CGUCCUCGG--------UGCUGA-----CAaa-------GCAGCUU- -5'
28012 3' -52.8 NC_005887.1 + 24257 0.68 0.661551
Target:  5'- gGCAGcAGCCACGGCgag-UCGcCGGAu -3'
miRNA:   3'- -CGUCcUCGGUGCUGacaaAGCaGCUU- -5'
28012 3' -52.8 NC_005887.1 + 17666 0.68 0.635202
Target:  5'- cCAGGcggucgaggaugccGGCCGCGGCUGgacaaUGUCGAAg -3'
miRNA:   3'- cGUCC--------------UCGGUGCUGACaaa--GCAGCUU- -5'
28012 3' -52.8 NC_005887.1 + 10632 0.69 0.581451
Target:  5'- cGC-GGAGCCugGGCgGcgUCGUUGGg -3'
miRNA:   3'- -CGuCCUCGGugCUGaCaaAGCAGCUu -5'
28012 3' -52.8 NC_005887.1 + 33601 1.08 0.001414
Target:  5'- gGCAGGAGCCACGACUGUUUCGUCGAAu -3'
miRNA:   3'- -CGUCCUCGGUGCUGACAAAGCAGCUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.