miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28268 3' -42.9 NC_005902.1 + 33085 0.67 1
Target:  5'- --uUUAAAUCCuAAGGCUUAUAUa--- -3'
miRNA:   3'- gguAAUUUAGG-UUCCGAGUAUGaaca -5'
28268 3' -42.9 NC_005902.1 + 28929 0.66 1
Target:  5'- cCCuUUAAAUCCuaaGCUUAUACUUa- -3'
miRNA:   3'- -GGuAAUUUAGGuucCGAGUAUGAAca -5'
28268 3' -42.9 NC_005902.1 + 10304 0.67 1
Target:  5'- aCCuuUUAAAUCCuaaaGCUCAuUACUUGUu -3'
miRNA:   3'- -GGu-AAUUUAGGuuc-CGAGU-AUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 97500 0.68 1
Target:  5'- -gGUUAAAUCuCAAGGCUUguGUACUc-- -3'
miRNA:   3'- ggUAAUUUAG-GUUCCGAG--UAUGAaca -5'
28268 3' -42.9 NC_005902.1 + 90543 0.68 1
Target:  5'- uCCuUUGAAUCUuaaaGCUUAUACUUGUu -3'
miRNA:   3'- -GGuAAUUUAGGuuc-CGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 173824 0.67 1
Target:  5'- cCCuUUAAAuUCUAAaGCUCAUAUUUGUu -3'
miRNA:   3'- -GGuAAUUU-AGGUUcCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 68999 0.68 0.999999
Target:  5'- --uUUAAAUCCuAAGGCUUAUACc--- -3'
miRNA:   3'- gguAAUUUAGG-UUCCGAGUAUGaaca -5'
28268 3' -42.9 NC_005902.1 + 17640 0.69 0.999998
Target:  5'- cCCuUUAAAccCUAAGGCUUAUACUUa- -3'
miRNA:   3'- -GGuAAUUUa-GGUUCCGAGUAUGAAca -5'
28268 3' -42.9 NC_005902.1 + 10244 0.7 0.99999
Target:  5'- -gAUUAAAuUCUAAGGCUUAUACUc-- -3'
miRNA:   3'- ggUAAUUU-AGGUUCCGAGUAUGAaca -5'
28268 3' -42.9 NC_005902.1 + 91164 0.7 0.999986
Target:  5'- gUAUUAAAggguaaaauccUCUAAGGCUUAUACUUa- -3'
miRNA:   3'- gGUAAUUU-----------AGGUUCCGAGUAUGAAca -5'
28268 3' -42.9 NC_005902.1 + 131072 0.7 0.999981
Target:  5'- -gGUUAAAuUCUAAGGCUUAUACaaGUa -3'
miRNA:   3'- ggUAAUUU-AGGUUCCGAGUAUGaaCA- -5'
28268 3' -42.9 NC_005902.1 + 46256 0.71 0.999973
Target:  5'- cCCuUUAAAUCCuAAGGCUUAUAUa--- -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGaaca -5'
28268 3' -42.9 NC_005902.1 + 48456 0.71 0.999964
Target:  5'- --------cCUAAGGCUUAUACUUGUu -3'
miRNA:   3'- gguaauuuaGGUUCCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 84873 0.71 0.999951
Target:  5'- uCCAUUAAAUCuUAAGGCUUAaAUgagUGUa -3'
miRNA:   3'- -GGUAAUUUAG-GUUCCGAGUaUGa--ACA- -5'
28268 3' -42.9 NC_005902.1 + 166198 0.71 0.999951
Target:  5'- gUAUUGcuuuAAUUCAuaAGGCUUAUACUUGUu -3'
miRNA:   3'- gGUAAU----UUAGGU--UCCGAGUAUGAACA- -5'
28268 3' -42.9 NC_005902.1 + 36317 0.72 0.999883
Target:  5'- --uUUAAAUCCuAAGGCUUAUACaaGUg -3'
miRNA:   3'- gguAAUUUAGG-UUCCGAGUAUGaaCA- -5'
28268 3' -42.9 NC_005902.1 + 133562 0.72 0.999883
Target:  5'- cCCuUUAAAUCCuAGGGCUUAUAUUcGUu -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGAaCA- -5'
28268 3' -42.9 NC_005902.1 + 122853 0.72 0.999743
Target:  5'- aCCuuUUAAAUCCuAAGGCUUAUAUUUa- -3'
miRNA:   3'- -GGu-AAUUUAGG-UUCCGAGUAUGAAca -5'
28268 3' -42.9 NC_005902.1 + 1483 0.72 0.999743
Target:  5'- cCCuUUAAAUCCuAAGGCUUAUAUgaGUa -3'
miRNA:   3'- -GGuAAUUUAGG-UUCCGAGUAUGaaCA- -5'
28268 3' -42.9 NC_005902.1 + 139015 0.72 0.999743
Target:  5'- --uUUAAAUCuUAAGGUUUAUACUUGUu -3'
miRNA:   3'- gguAAUUUAG-GUUCCGAGUAUGAACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.