miRNA display CGI


Results 1 - 4 of 4 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28594 5' -54 NC_005975.1 + 3419 1.11 0.000114
Target:  5'- cAGGUCCCUCCUCCAUAUGACACUCGCc -3'
miRNA:   3'- -UCCAGGGAGGAGGUAUACUGUGAGCG- -5'
28594 5' -54 NC_005975.1 + 6376 0.7 0.185433
Target:  5'- -aGUCCC-CCauUCCAUugaGUGACACUcCGCu -3'
miRNA:   3'- ucCAGGGaGG--AGGUA---UACUGUGA-GCG- -5'
28594 5' -54 NC_005975.1 + 6633 0.66 0.331665
Target:  5'- --cUCaCCUCCUCCuagagAUGACACcUGCc -3'
miRNA:   3'- uccAG-GGAGGAGGua---UACUGUGaGCG- -5'
28594 5' -54 NC_005975.1 + 11750 0.66 0.35977
Target:  5'- -aGUUCCUCCUCCAUuUGGCG---GCa -3'
miRNA:   3'- ucCAGGGAGGAGGUAuACUGUgagCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.