Results 21 - 40 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 113495 | 0.66 | 0.992564 |
Target: 5'- gUAGAGgCGuGC-GUCGGCCGGGCa-- -3' miRNA: 3'- -GUUUCgGUuUGaCAGCCGGUUCGagg -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 132622 | 0.66 | 0.992564 |
Target: 5'- aAGGGCCGGcAgUGU-GGCCc-GCUCCa -3' miRNA: 3'- gUUUCGGUU-UgACAgCCGGuuCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 40027 | 0.66 | 0.992564 |
Target: 5'- gGGGGCCu-GCUGggGGCCGuAGCcgacUCCg -3' miRNA: 3'- gUUUCGGuuUGACagCCGGU-UCG----AGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 48863 | 0.66 | 0.991457 |
Target: 5'- ---cGCgAAGCcGUCGGCCuccAGGCgCCa -3' miRNA: 3'- guuuCGgUUUGaCAGCCGG---UUCGaGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 153560 | 0.66 | 0.991457 |
Target: 5'- --cGGUgGAGCUGccgUGGUC-AGCUCCg -3' miRNA: 3'- guuUCGgUUUGACa--GCCGGuUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 91209 | 0.66 | 0.991457 |
Target: 5'- ---cGCCugcCUGUUGGCCGGuCUCUg -3' miRNA: 3'- guuuCGGuuuGACAGCCGGUUcGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 68020 | 0.66 | 0.991457 |
Target: 5'- -uAAGCgCAAACUGgggccCGGCCAcgaccagguggcGGCUgCCc -3' miRNA: 3'- guUUCG-GUUUGACa----GCCGGU------------UCGA-GG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 16167 | 0.66 | 0.991457 |
Target: 5'- gGAAGCCGAGCguUGUCuugcugcuGGCCGcccuggugGGCUgCa -3' miRNA: 3'- gUUUCGGUUUG--ACAG--------CCGGU--------UCGAgG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 86039 | 0.66 | 0.990223 |
Target: 5'- uGGAGCC--GCUGUCu-CCGucGGCUCCu -3' miRNA: 3'- gUUUCGGuuUGACAGccGGU--UCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 10843 | 0.66 | 0.990223 |
Target: 5'- cCGAAGCCAgccAGCa---GGCCAuacGGCUCUc -3' miRNA: 3'- -GUUUCGGU---UUGacagCCGGU---UCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 130064 | 0.66 | 0.990223 |
Target: 5'- aAAGGUCAAGC--UCGGCCGGGaacaCCa -3' miRNA: 3'- gUUUCGGUUUGacAGCCGGUUCga--GG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 61591 | 0.66 | 0.990223 |
Target: 5'- aAGAGCC-GGCUGcagCGGCCGcGGCcggggCCg -3' miRNA: 3'- gUUUCGGuUUGACa--GCCGGU-UCGa----GG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 128217 | 0.66 | 0.990223 |
Target: 5'- -cGGGCCAGACgcucuuUCGGCgCGgggAGCUCUu -3' miRNA: 3'- guUUCGGUUUGac----AGCCG-GU---UCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 122564 | 0.66 | 0.990223 |
Target: 5'- --uGGCCAGACUGgacGCCuGGC-CCa -3' miRNA: 3'- guuUCGGUUUGACagcCGGuUCGaGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 116647 | 0.66 | 0.990223 |
Target: 5'- aCAuGGCCAcaAACUGggCGGCCAucucgUCCa -3' miRNA: 3'- -GUuUCGGU--UUGACa-GCCGGUucg--AGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 153388 | 0.66 | 0.990223 |
Target: 5'- --uGGCCGGAUUGUUGaggguGCCAagggAGUUCCc -3' miRNA: 3'- guuUCGGUUUGACAGC-----CGGU----UCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 139073 | 0.66 | 0.990223 |
Target: 5'- gGAAGCUGGACU-UUGGCCAcgGGCcucgCCu -3' miRNA: 3'- gUUUCGGUUUGAcAGCCGGU--UCGa---GG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 147767 | 0.66 | 0.990223 |
Target: 5'- gCGAAGcCCAGGCUccCGGCCu--CUCCc -3' miRNA: 3'- -GUUUC-GGUUUGAcaGCCGGuucGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 78561 | 0.66 | 0.988853 |
Target: 5'- -cGAGCCGccccauaucAGCUGccccaGGCCGGGC-CCg -3' miRNA: 3'- guUUCGGU---------UUGACag---CCGGUUCGaGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 19021 | 0.66 | 0.988853 |
Target: 5'- gCGAGGCUggguGGCUGggcaGGCCGGGuCUCg -3' miRNA: 3'- -GUUUCGGu---UUGACag--CCGGUUC-GAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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