miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2878 5' -55.5 NC_001493.1 + 25265 0.66 0.914774
Target:  5'- -gGCCCUGUucGGGAaCCGaggGCGACGa -3'
miRNA:   3'- caUGGGGCA--CCCUaGGCacaUGCUGU- -5'
2878 5' -55.5 NC_001493.1 + 96051 0.66 0.908787
Target:  5'- -cACCCCGUGacGUUCGgGUGCGugAa -3'
miRNA:   3'- caUGGGGCACccUAGGCaCAUGCugU- -5'
2878 5' -55.5 NC_001493.1 + 47930 0.66 0.902562
Target:  5'- cGUGCCCCGUGaaccucguGGUCCGcacgcauagGUACGAgAa -3'
miRNA:   3'- -CAUGGGGCACc-------CUAGGCa--------CAUGCUgU- -5'
2878 5' -55.5 NC_001493.1 + 54858 0.67 0.867973
Target:  5'- uGUGCCCCG-GGGAgcgaGUgGUGCGAg- -3'
miRNA:   3'- -CAUGGGGCaCCCUagg-CA-CAUGCUgu -5'
2878 5' -55.5 NC_001493.1 + 18603 0.67 0.851814
Target:  5'- -cACCCCGUauaacaccggaacGGGccCCGaGUACGACGg -3'
miRNA:   3'- caUGGGGCA-------------CCCuaGGCaCAUGCUGU- -5'
2878 5' -55.5 NC_001493.1 + 62820 0.68 0.828057
Target:  5'- --cCCCCGUGGGcuucgCCGUc-GCGACGg -3'
miRNA:   3'- cauGGGGCACCCua---GGCAcaUGCUGU- -5'
2878 5' -55.5 NC_001493.1 + 37443 0.68 0.828057
Target:  5'- uUGCCCaugGGGAUCUG-GUGCGAg- -3'
miRNA:   3'- cAUGGGgcaCCCUAGGCaCAUGCUgu -5'
2878 5' -55.5 NC_001493.1 + 49744 0.68 0.819504
Target:  5'- gGUGuCCCCGUGGGGUugaacaucucggCCGUGc-UGACGg -3'
miRNA:   3'- -CAU-GGGGCACCCUA------------GGCACauGCUGU- -5'
2878 5' -55.5 NC_001493.1 + 43282 0.69 0.792848
Target:  5'- -cGCCCCGUGG---UCGUGUACuGCAg -3'
miRNA:   3'- caUGGGGCACCcuaGGCACAUGcUGU- -5'
2878 5' -55.5 NC_001493.1 + 111912 0.72 0.603672
Target:  5'- -cGCCCCGUGGuGAUCacggGUGUcCGAUAc -3'
miRNA:   3'- caUGGGGCACC-CUAGg---CACAuGCUGU- -5'
2878 5' -55.5 NC_001493.1 + 124686 1.09 0.003081
Target:  5'- cGUACCCCGUGGGAUCCGUGUACGACAg -3'
miRNA:   3'- -CAUGGGGCACCCUAGGCACAUGCUGU- -5'
2878 5' -55.5 NC_001493.1 + 9132 1.09 0.003081
Target:  5'- cGUACCCCGUGGGAUCCGUGUACGACAg -3'
miRNA:   3'- -CAUGGGGCACCCUAGGCACAUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.