miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2884 3' -54.3 NC_001493.1 + 94786 0.66 0.946235
Target:  5'- gGGAUCUCCcGGaacagCUCGACCGca-CCCa -3'
miRNA:   3'- -UUUAGAGGcCCa----GAGCUGGUcuaGGG- -5'
2884 3' -54.3 NC_001493.1 + 10788 0.66 0.946235
Target:  5'- -cGUC-CCGaGaGUCUCGACCgcGGAggaCCCg -3'
miRNA:   3'- uuUAGaGGC-C-CAGAGCUGG--UCUa--GGG- -5'
2884 3' -54.3 NC_001493.1 + 126342 0.66 0.946235
Target:  5'- -cGUC-CCGaGaGUCUCGACCgcGGAggaCCCg -3'
miRNA:   3'- uuUAGaGGC-C-CAGAGCUGG--UCUa--GGG- -5'
2884 3' -54.3 NC_001493.1 + 25458 0.66 0.941662
Target:  5'- cGGUCUCCGGGgggaUCaACCGcgugcGAUCCUc -3'
miRNA:   3'- uUUAGAGGCCCag--AGcUGGU-----CUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 48143 0.66 0.936845
Target:  5'- -uGUCUCuCGGGUUgaagUCGACacccAUCCCg -3'
miRNA:   3'- uuUAGAG-GCCCAG----AGCUGguc-UAGGG- -5'
2884 3' -54.3 NC_001493.1 + 131655 0.66 0.936845
Target:  5'- -cGUC-CCGGGgCUCGACCgcucgAGAcUCCUc -3'
miRNA:   3'- uuUAGaGGCCCaGAGCUGG-----UCU-AGGG- -5'
2884 3' -54.3 NC_001493.1 + 16100 0.66 0.936845
Target:  5'- -cGUC-CCGGGgCUCGACCgcucgAGAcUCCUc -3'
miRNA:   3'- uuUAGaGGCCCaGAGCUGG-----UCU-AGGG- -5'
2884 3' -54.3 NC_001493.1 + 110501 0.66 0.931781
Target:  5'- --uUCUUCGGGaUCUCGACCcaccGAUgCg -3'
miRNA:   3'- uuuAGAGGCCC-AGAGCUGGu---CUAgGg -5'
2884 3' -54.3 NC_001493.1 + 11315 0.66 0.931262
Target:  5'- cAGAUCgUCCgccucggGGGUCaUCGAgcCCuGGUCCCg -3'
miRNA:   3'- -UUUAG-AGG-------CCCAG-AGCU--GGuCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 126869 0.66 0.931262
Target:  5'- cAGAUCgUCCgccucggGGGUCaUCGAgcCCuGGUCCCg -3'
miRNA:   3'- -UUUAG-AGG-------CCCAG-AGCU--GGuCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 95489 0.66 0.92647
Target:  5'- cGAUCggggaggugaCGGGUCguuucugguUCGACgAGGUCCCc -3'
miRNA:   3'- uUUAGag--------GCCCAG---------AGCUGgUCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 23375 0.66 0.92647
Target:  5'- -uGUCUUCGGuGgcCUCGGCCAGcAUCUg -3'
miRNA:   3'- uuUAGAGGCC-Ca-GAGCUGGUC-UAGGg -5'
2884 3' -54.3 NC_001493.1 + 37553 0.66 0.92647
Target:  5'- -------gGGGUCgUCGACCGGGUCgCCc -3'
miRNA:   3'- uuuagaggCCCAG-AGCUGGUCUAG-GG- -5'
2884 3' -54.3 NC_001493.1 + 32513 0.67 0.920912
Target:  5'- uAGGUUga-GGGUCUCGACC---UCCCu -3'
miRNA:   3'- -UUUAGaggCCCAGAGCUGGucuAGGG- -5'
2884 3' -54.3 NC_001493.1 + 110354 0.67 0.915105
Target:  5'- ---aCUCCGGGcgcgggCUCGACCuucAGGUCa- -3'
miRNA:   3'- uuuaGAGGCCCa-----GAGCUGG---UCUAGgg -5'
2884 3' -54.3 NC_001493.1 + 46347 0.67 0.909053
Target:  5'- --uUCUCCGGGUgg-GACCGucuUCCCg -3'
miRNA:   3'- uuuAGAGGCCCAgagCUGGUcu-AGGG- -5'
2884 3' -54.3 NC_001493.1 + 90839 0.67 0.895551
Target:  5'- --cUCUCgacucggagccggCGGGcCUCGAUCAGAUCUUu -3'
miRNA:   3'- uuuAGAG-------------GCCCaGAGCUGGUCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 126258 0.67 0.889441
Target:  5'- aAAAUCUCUaaGUCUC-ACCcGAUCCCg -3'
miRNA:   3'- -UUUAGAGGccCAGAGcUGGuCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 72937 0.68 0.885262
Target:  5'- uGAGUCUUuaCGGGuacccccaUCUCGACCAGAgcgggaagaagugcgUCUCg -3'
miRNA:   3'- -UUUAGAG--GCCC--------AGAGCUGGUCU---------------AGGG- -5'
2884 3' -54.3 NC_001493.1 + 10599 0.68 0.88243
Target:  5'- aAAAUCUCUaaGUCUCgGACCGGGgcugugCCCa -3'
miRNA:   3'- -UUUAGAGGccCAGAG-CUGGUCUa-----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.