miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29402 3' -56.8 NC_006151.1 + 83633 0.66 0.84286
Target:  5'- cGAAG-GCGGCcugGUGCUgCgccgugacgagGGCCGCg -3'
miRNA:   3'- uCUUCuCGUCGca-CACGAgG-----------UCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 10461 0.66 0.840404
Target:  5'- aGGAGGAcGCGGCGgcgGUgaaggaggagagccGC-CCGGCgCGCg -3'
miRNA:   3'- -UCUUCU-CGUCGCa--CA--------------CGaGGUCG-GCG- -5'
29402 3' -56.8 NC_006151.1 + 2329 0.66 0.834605
Target:  5'- cGggGcGGCcucGGCGUcggGCUCCAgcagcGCCGCg -3'
miRNA:   3'- uCuuC-UCG---UCGCAca-CGAGGU-----CGGCG- -5'
29402 3' -56.8 NC_006151.1 + 97795 0.66 0.834605
Target:  5'- cGAAGcgcucaGGCGcGCGgccGUGCgCCGGUCGCg -3'
miRNA:   3'- uCUUC------UCGU-CGCa--CACGaGGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 139558 0.66 0.834605
Target:  5'- cGAGGAGCGGC----GC-CCGGuCCGCg -3'
miRNA:   3'- uCUUCUCGUCGcacaCGaGGUC-GGCG- -5'
29402 3' -56.8 NC_006151.1 + 91088 0.66 0.834605
Target:  5'- cGGgcGAGC-GCGaagGUcGUcCCGGCCGCg -3'
miRNA:   3'- -UCuuCUCGuCGCa--CA-CGaGGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 120207 0.66 0.834605
Target:  5'- -cAAGGGCAGCGcgGaGCccCCGGCgCGCg -3'
miRNA:   3'- ucUUCUCGUCGCa-CaCGa-GGUCG-GCG- -5'
29402 3' -56.8 NC_006151.1 + 84137 0.66 0.826164
Target:  5'- ---cGGGCAGCGgcacgagggGCUgugCCAGCUGCg -3'
miRNA:   3'- ucuuCUCGUCGCaca------CGA---GGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 3966 0.66 0.826164
Target:  5'- gGGccGcGCGGCGgccucgGCgagCCGGCCGCg -3'
miRNA:   3'- -UCuuCuCGUCGCaca---CGa--GGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 105019 0.66 0.82531
Target:  5'- cGGAGGAGCuggugacgcaggcGGCGcUGcUGCUCgGcGCCGUc -3'
miRNA:   3'- -UCUUCUCG-------------UCGC-AC-ACGAGgU-CGGCG- -5'
29402 3' -56.8 NC_006151.1 + 111745 0.67 0.808751
Target:  5'- uAGggGucGCAGgggaCGUGgGC-CCAGCUGCg -3'
miRNA:   3'- -UCuuCu-CGUC----GCACaCGaGGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 69718 0.67 0.808751
Target:  5'- cGGggGcAGCAGCGcgucgaUGUgGCcCCccgcGGCCGCg -3'
miRNA:   3'- -UCuuC-UCGUCGC------ACA-CGaGG----UCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 72266 0.67 0.808751
Target:  5'- cGccGAGCGGCGUGg---CCAGCaUGCg -3'
miRNA:   3'- uCuuCUCGUCGCACacgaGGUCG-GCG- -5'
29402 3' -56.8 NC_006151.1 + 132517 0.67 0.805187
Target:  5'- -----cGCAGCGUGgacacgaagaagcGCUCCAcgGCCGCc -3'
miRNA:   3'- ucuucuCGUCGCACa------------CGAGGU--CGGCG- -5'
29402 3' -56.8 NC_006151.1 + 40543 0.67 0.799795
Target:  5'- cGGAGGuGGCGGCGgugGUggaagcggcgGCggCGGCCGCg -3'
miRNA:   3'- -UCUUC-UCGUCGCa--CA----------CGagGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 52391 0.67 0.799795
Target:  5'- -cGGGGGCGGCGg--GCgCC-GCCGCg -3'
miRNA:   3'- ucUUCUCGUCGCacaCGaGGuCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 71985 0.67 0.799795
Target:  5'- -cGGGGGCAGC-UGguaGCgCCGGCCGUu -3'
miRNA:   3'- ucUUCUCGUCGcACa--CGaGGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 96752 0.67 0.790686
Target:  5'- cGGAGGccauGGCGGCGUGUGCUCgacacggggaGGUgaGCg -3'
miRNA:   3'- -UCUUC----UCGUCGCACACGAGg---------UCGg-CG- -5'
29402 3' -56.8 NC_006151.1 + 11802 0.67 0.790686
Target:  5'- gAGAGGGGCGGgGUGgggugggggGCggCGGCgGCu -3'
miRNA:   3'- -UCUUCUCGUCgCACa--------CGagGUCGgCG- -5'
29402 3' -56.8 NC_006151.1 + 57838 0.67 0.781431
Target:  5'- cGGAGGGC-GCacggGUGCUCCAcGgCGCu -3'
miRNA:   3'- uCUUCUCGuCGca--CACGAGGU-CgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.