Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29493 | 3' | -52.8 | NC_006151.1 | + | 43132 | 1.08 | 0.005273 |
Target: 5'- gGUAGGGCUCCAGAAGGGUUGAGAACAc -3' miRNA: 3'- -CAUCCCGAGGUCUUCCCAACUCUUGU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 99485 | 0.77 | 0.481602 |
Target: 5'- cUGGGGCUCCccgAGAAGGGcgUG-GAGCAc -3' miRNA: 3'- cAUCCCGAGG---UCUUCCCa-ACuCUUGU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 29277 | 0.71 | 0.799757 |
Target: 5'- --cGGGUgagUCGGGAGGGUggggUGGGAGCGg -3' miRNA: 3'- cauCCCGa--GGUCUUCCCA----ACUCUUGU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 5257 | 0.71 | 0.808973 |
Target: 5'- -gGGGGC-CCGGggGGcg-GAGGGCGa -3' miRNA: 3'- caUCCCGaGGUCuuCCcaaCUCUUGU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 8436 | 0.7 | 0.824239 |
Target: 5'- uGUAGGGaaggcucgcucucuCUCguGGAGGGUcggGAGGACGg -3' miRNA: 3'- -CAUCCC--------------GAGguCUUCCCAa--CUCUUGU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 31651 | 0.7 | 0.844019 |
Target: 5'- --cGGGCgcgCgGGGAGGGagGAGGGCGg -3' miRNA: 3'- cauCCCGa--GgUCUUCCCaaCUCUUGU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 45461 | 0.69 | 0.86816 |
Target: 5'- -cGGGGCggcgaCGGAcccAGGGgUGAGAGCGg -3' miRNA: 3'- caUCCCGag---GUCU---UCCCaACUCUUGU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 5806 | 0.69 | 0.875758 |
Target: 5'- -cGGGGCUgCcGAGGGGccggGAGAGCc -3' miRNA: 3'- caUCCCGAgGuCUUCCCaa--CUCUUGu -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 27364 | 0.69 | 0.875758 |
Target: 5'- -cGGGGC-CCGGgcGGGUcgacgggcGAGAACGg -3' miRNA: 3'- caUCCCGaGGUCuuCCCAa-------CUCUUGU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 5019 | 0.69 | 0.890246 |
Target: 5'- gGgcGGGCUCCGGGgccGGGGccgGGGAGg- -3' miRNA: 3'- -CauCCCGAGGUCU---UCCCaa-CUCUUgu -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 4914 | 0.68 | 0.903757 |
Target: 5'- -cAGGGCUCCccgAGcGGGGU-GAGcAGCGg -3' miRNA: 3'- caUCCCGAGG---UCuUCCCAaCUC-UUGU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 110794 | 0.67 | 0.927742 |
Target: 5'- -cGGGGCUagGGcGGGGGgcGAGGGCAg -3' miRNA: 3'- caUCCCGAggUC-UUCCCaaCUCUUGU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 10382 | 0.67 | 0.943033 |
Target: 5'- -aGGGGgUCgGGGggaagggaggGGGGggGAGAGCGg -3' miRNA: 3'- caUCCCgAGgUCU----------UCCCaaCUCUUGU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 27481 | 0.67 | 0.943033 |
Target: 5'- -cGGGGggUCGGcGGGGUggUGGGAACGg -3' miRNA: 3'- caUCCCgaGGUCuUCCCA--ACUCUUGU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 33246 | 0.67 | 0.94762 |
Target: 5'- -aGGGGgUCCgggGGAAGGGU--GGGGCGg -3' miRNA: 3'- caUCCCgAGG---UCUUCCCAacUCUUGU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 17116 | 0.66 | 0.956044 |
Target: 5'- -gGGGGCUCCGGcGGcGGUgcugcGGGAGg- -3' miRNA: 3'- caUCCCGAGGUCuUC-CCAa----CUCUUgu -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 27309 | 0.66 | 0.959889 |
Target: 5'- cGUGGGGgUCgAGgcGGGggacgGGGGGCu -3' miRNA: 3'- -CAUCCCgAGgUCuuCCCaa---CUCUUGu -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 26246 | 0.66 | 0.963496 |
Target: 5'- -gAGGGCacaaCAGAGGGGagGGGGAgAg -3' miRNA: 3'- caUCCCGag--GUCUUCCCaaCUCUUgU- -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 44476 | 0.66 | 0.963496 |
Target: 5'- -gAGGGUggaCGGggGGGgugGGGGAUg -3' miRNA: 3'- caUCCCGag-GUCuuCCCaa-CUCUUGu -5' |
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29493 | 3' | -52.8 | NC_006151.1 | + | 110028 | 0.66 | 0.96687 |
Target: 5'- cUGGGGC-CUggaggacgaGGAGGGGgacGAGGACGg -3' miRNA: 3'- cAUCCCGaGG---------UCUUCCCaa-CUCUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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