miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30306 3' -49.4 NC_006367.1 + 767 1.11 0.000101
Target:  5'- gAAAGACGAAAACACACGACCGACGGCg -3'
miRNA:   3'- -UUUCUGCUUUUGUGUGCUGGCUGCCG- -5'
30306 3' -49.4 NC_006367.1 + 806 0.67 0.284536
Target:  5'- ---cGCGggGACAgACGACUuggGGCGGa -3'
miRNA:   3'- uuucUGCuuUUGUgUGCUGG---CUGCCg -5'
30306 3' -49.4 NC_006367.1 + 1333 0.71 0.168617
Target:  5'- -uGGugGAGAcCACGCG--UGACGGCa -3'
miRNA:   3'- uuUCugCUUUuGUGUGCugGCUGCCG- -5'
30306 3' -49.4 NC_006367.1 + 2114 0.71 0.151729
Target:  5'- cGAAGGCGAggucggucgggucGAACugGuCGACgaUGACGGCg -3'
miRNA:   3'- -UUUCUGCU-------------UUUGugU-GCUG--GCUGCCG- -5'
30306 3' -49.4 NC_006367.1 + 2267 0.74 0.090215
Target:  5'- cGAAGugcCGGAAACGaa-GACCGAUGGCa -3'
miRNA:   3'- -UUUCu--GCUUUUGUgugCUGGCUGCCG- -5'
30306 3' -49.4 NC_006367.1 + 2749 0.65 0.372617
Target:  5'- --cGACGGccccGGAUGCAgGGCCGAcccccgaaccccaCGGCg -3'
miRNA:   3'- uuuCUGCU----UUUGUGUgCUGGCU-------------GCCG- -5'
30306 3' -49.4 NC_006367.1 + 3013 0.74 0.096833
Target:  5'- ---cACaAGAGCgACACGGCCGugGGCa -3'
miRNA:   3'- uuucUGcUUUUG-UGUGCUGGCugCCG- -5'
30306 3' -49.4 NC_006367.1 + 4534 0.66 0.331857
Target:  5'- -cGGAUGcAAGgGCugcuauCGACCGAgCGGCa -3'
miRNA:   3'- uuUCUGCuUUUgUGu-----GCUGGCU-GCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.