miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30679 5' -50.8 NC_006551.1 + 5210 1.12 0.000158
Target:  5'- aUACUCCCCCAGAUCAUCAAAGAUGCCa -3'
miRNA:   3'- -AUGAGGGGGUCUAGUAGUUUCUACGG- -5'
30679 5' -50.8 NC_006551.1 + 7563 0.7 0.263564
Target:  5'- gGCUCCguuguCCCAGAgaGUCAGGaGUGCCg -3'
miRNA:   3'- aUGAGG-----GGGUCUagUAGUUUcUACGG- -5'
30679 5' -50.8 NC_006551.1 + 4094 0.7 0.248087
Target:  5'- cGCUCCCCU--AUCAgcugcAGAUGCCg -3'
miRNA:   3'- aUGAGGGGGucUAGUaguu-UCUACGG- -5'
30679 5' -50.8 NC_006551.1 + 4978 0.71 0.233369
Target:  5'- -uUUCCCCCuGuggCGUUuuGAAGAUGCCu -3'
miRNA:   3'- auGAGGGGGuCua-GUAG--UUUCUACGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.