miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30694 5' -56.6 NC_006552.1 + 2586 0.66 0.679855
Target:  5'- cGCGGCACgUGGGUUGAGUcUGCccgcauGCCaGCg -3'
miRNA:   3'- -UGUCGUG-GUCCGACUUA-ACG------CGGcCG- -5'
30694 5' -56.6 NC_006552.1 + 32004 0.72 0.331716
Target:  5'- -gGGUuguCCAGGUgGAGUUGCacGCCGGCc -3'
miRNA:   3'- ugUCGu--GGUCCGaCUUAACG--CGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 29036 0.71 0.348817
Target:  5'- gGCGGCAUCGGcGCUGGccucgccagcauCGCCGGCa -3'
miRNA:   3'- -UGUCGUGGUC-CGACUuaac--------GCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 59511 0.71 0.356335
Target:  5'- gGCAGCGCUcucGGCUGAuucGCGgCGGUc -3'
miRNA:   3'- -UGUCGUGGu--CCGACUuaaCGCgGCCG- -5'
30694 5' -56.6 NC_006552.1 + 14900 0.7 0.400142
Target:  5'- -uGGCgcccGCCGGGCgcucaccgaAGUUGCGUCGGCa -3'
miRNA:   3'- ugUCG----UGGUCCGac-------UUAACGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 21192 0.7 0.409307
Target:  5'- cCAGgGCCAGGC-GAAccuCGCCGGUg -3'
miRNA:   3'- uGUCgUGGUCCGaCUUaacGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 44066 0.7 0.437569
Target:  5'- gGCuGCucgcCCAGGUUGAcggGCGgCGGCg -3'
miRNA:   3'- -UGuCGu---GGUCCGACUuaaCGCgGCCG- -5'
30694 5' -56.6 NC_006552.1 + 25595 0.69 0.457021
Target:  5'- aACAGCGCCGGGCcGAucagGUcuuccacuGCgGGCg -3'
miRNA:   3'- -UGUCGUGGUCCGaCUuaa-CG--------CGgCCG- -5'
30694 5' -56.6 NC_006552.1 + 11399 0.69 0.457021
Target:  5'- -uGGCACCGGGUcgUGcucuUUG-GCCGGCu -3'
miRNA:   3'- ugUCGUGGUCCG--ACuu--AACgCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 20739 0.72 0.316011
Target:  5'- aGCAGCaACUGcGCUGccg-GCGCCGGCa -3'
miRNA:   3'- -UGUCG-UGGUcCGACuuaaCGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 3437 0.72 0.300873
Target:  5'- cCAGCauGCCAGGCcu-GUUGCGgUGGCg -3'
miRNA:   3'- uGUCG--UGGUCCGacuUAACGCgGCCG- -5'
30694 5' -56.6 NC_006552.1 + 8477 0.73 0.293516
Target:  5'- cGCGGgACCGuGGCgagGAAcUGCGCCaGGCc -3'
miRNA:   3'- -UGUCgUGGU-CCGa--CUUaACGCGG-CCG- -5'
30694 5' -56.6 NC_006552.1 + 44521 0.78 0.140448
Target:  5'- aACAGCGCCu-GCUcGAuggGCGCCGGCa -3'
miRNA:   3'- -UGUCGUGGucCGA-CUuaaCGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 31679 0.76 0.189236
Target:  5'- aACAGCGCCuuGCUGGAacuggUGCGCaGGCg -3'
miRNA:   3'- -UGUCGUGGucCGACUUa----ACGCGgCCG- -5'
30694 5' -56.6 NC_006552.1 + 42805 0.75 0.221721
Target:  5'- uACAGCACCGucucGCUGA--UGCGCgCGGUg -3'
miRNA:   3'- -UGUCGUGGUc---CGACUuaACGCG-GCCG- -5'
30694 5' -56.6 NC_006552.1 + 38664 0.74 0.235993
Target:  5'- gGCGGCGCCGGGgUGuccagcgucagGCGCuCGGCc -3'
miRNA:   3'- -UGUCGUGGUCCgACuuaa-------CGCG-GCCG- -5'
30694 5' -56.6 NC_006552.1 + 47044 0.74 0.252315
Target:  5'- gUAGC-CCGGGCgGAuuGUUGUGCCGGa -3'
miRNA:   3'- uGUCGuGGUCCGaCU--UAACGCGGCCg -5'
30694 5' -56.6 NC_006552.1 + 43148 0.73 0.279226
Target:  5'- gGCGGCcugGCCAGuGCUGucgcugaUGCGCgCGGCa -3'
miRNA:   3'- -UGUCG---UGGUC-CGACuua----ACGCG-GCCG- -5'
30694 5' -56.6 NC_006552.1 + 3838 0.73 0.286301
Target:  5'- cGCAGCaacgucgggaGCCGGGCcaUGuuuuGgcGCGCCGGCg -3'
miRNA:   3'- -UGUCG----------UGGUCCG--ACu---UaaCGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 46858 0.73 0.292788
Target:  5'- cGCuGCACCcuGGGCUGcuugcugaccacgaaGCGCCGGCg -3'
miRNA:   3'- -UGuCGUGG--UCCGACuuaa-----------CGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.