miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30694 5' -56.6 NC_006552.1 + 51608 0.67 0.6025
Target:  5'- --cGCAUCAGGCUGcGguccccgucuuccUUGCGCUGcGCc -3'
miRNA:   3'- uguCGUGGUCCGACuU-------------AACGCGGC-CG- -5'
30694 5' -56.6 NC_006552.1 + 4079 0.67 0.592715
Target:  5'- aGCGGCugCAGGacaucagcGAAgagcagGCGuuGGCa -3'
miRNA:   3'- -UGUCGugGUCCga------CUUaa----CGCggCCG- -5'
30694 5' -56.6 NC_006552.1 + 14167 0.67 0.592715
Target:  5'- -gAGCGCCuGGCcGA----UGCCGGCg -3'
miRNA:   3'- ugUCGUGGuCCGaCUuaacGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 3207 0.67 0.592715
Target:  5'- uGCAGCAgCgAGGCcGAAcucUGCG-CGGCg -3'
miRNA:   3'- -UGUCGU-GgUCCGaCUUa--ACGCgGCCG- -5'
30694 5' -56.6 NC_006552.1 + 31908 0.67 0.581874
Target:  5'- -aGGCAgUAGGCgGAAUUgaucGCGUgGGCg -3'
miRNA:   3'- ugUCGUgGUCCGaCUUAA----CGCGgCCG- -5'
30694 5' -56.6 NC_006552.1 + 63156 0.67 0.581874
Target:  5'- --uGCGCCugggacAGGCgcuUGAGc-GCGCCGGCg -3'
miRNA:   3'- uguCGUGG------UCCG---ACUUaaCGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 53645 0.67 0.571074
Target:  5'- cCAGCGCCcacGGaacggugaucuuGCUGccacUGCGCCGGCc -3'
miRNA:   3'- uGUCGUGG---UC------------CGACuua-ACGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 20327 0.67 0.571074
Target:  5'- -aGGCAgCCAGGUcuugaaccaUGAGUUGggcagcgGCCGGCg -3'
miRNA:   3'- ugUCGU-GGUCCG---------ACUUAACg------CGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 54366 0.67 0.569996
Target:  5'- gGCGGUuguucGCCGGGCUGcggcgcUGCcgacucuucggcuGCCGGCu -3'
miRNA:   3'- -UGUCG-----UGGUCCGACuua---ACG-------------CGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 38314 0.68 0.538999
Target:  5'- cGCGGCAUCuucGGCgacguuGUUGaUGCCGGCc -3'
miRNA:   3'- -UGUCGUGGu--CCGacu---UAAC-GCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 1379 0.68 0.538999
Target:  5'- uCGGCGcCCAGGCcagccaGcCGCCGGCg -3'
miRNA:   3'- uGUCGU-GGUCCGacuuaaC-GCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 36532 0.68 0.538999
Target:  5'- cAUGGCugCAGuGgUGAucUGCGgCGGCg -3'
miRNA:   3'- -UGUCGugGUC-CgACUuaACGCgGCCG- -5'
30694 5' -56.6 NC_006552.1 + 42521 0.68 0.521095
Target:  5'- cCAGUACCAcgagugcGGCauguccuuauugaccUGAAcaGCGCCGGCc -3'
miRNA:   3'- uGUCGUGGU-------CCG---------------ACUUaaCGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 34845 0.68 0.516915
Target:  5'- aAUAGCGCCAGGUcggcguUGuAGUUGCccgaaaaGCUGGUa -3'
miRNA:   3'- -UGUCGUGGUCCG------AC-UUAACG-------CGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 50005 0.69 0.497253
Target:  5'- cACAGguCCAcGGCcuUGAug-GUGCCGGUc -3'
miRNA:   3'- -UGUCguGGU-CCG--ACUuaaCGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 32635 0.69 0.494179
Target:  5'- aGCGGUccuuggcgaaugccGCCAGGCUGGugaa-GUCGGCg -3'
miRNA:   3'- -UGUCG--------------UGGUCCGACUuaacgCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 33101 0.69 0.48704
Target:  5'- -uGGCACCAGGCgcagcGAAgUGuCGCCcuggauGGCg -3'
miRNA:   3'- ugUCGUGGUCCGa----CUUaAC-GCGG------CCG- -5'
30694 5' -56.6 NC_006552.1 + 40409 0.69 0.48704
Target:  5'- uCAGCACCuGGGCgcGggUgaUGaCGCCGGa -3'
miRNA:   3'- uGUCGUGG-UCCGa-CuuA--AC-GCGGCCg -5'
30694 5' -56.6 NC_006552.1 + 59598 0.69 0.48704
Target:  5'- -aAGCcgGCCAGGCUGAcggucaGCG-CGGCa -3'
miRNA:   3'- ugUCG--UGGUCCGACUuaa---CGCgGCCG- -5'
30694 5' -56.6 NC_006552.1 + 45659 0.69 0.48704
Target:  5'- cACGuGCGCC--GCUGAcagaGCGCCGGCc -3'
miRNA:   3'- -UGU-CGUGGucCGACUuaa-CGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.