miRNA display CGI


Results 1 - 20 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31015 3' -60.5 NC_006560.1 + 143904 0.66 0.764555
Target:  5'- cCCGuCcgCGCCcgcgacuucGCGCGCCccacggccCCGCgagGCg -3'
miRNA:   3'- -GGCuGuaGCGG---------CGCGCGGu-------GGCGa--CG- -5'
31015 3' -60.5 NC_006560.1 + 7868 0.66 0.764555
Target:  5'- aCUGGCccauaaccaGUgGCUGCGCGCCAacagagaCGCcGCc -3'
miRNA:   3'- -GGCUG---------UAgCGGCGCGCGGUg------GCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 9497 0.66 0.764555
Target:  5'- aCGGC-UCGCCaCGC-CCGCgCGCgccgGCa -3'
miRNA:   3'- gGCUGuAGCGGcGCGcGGUG-GCGa---CG- -5'
31015 3' -60.5 NC_006560.1 + 40094 0.66 0.764555
Target:  5'- -gGGCGgggCGCC-CGgGCCGCCGg-GCg -3'
miRNA:   3'- ggCUGUa--GCGGcGCgCGGUGGCgaCG- -5'
31015 3' -60.5 NC_006560.1 + 57915 0.66 0.764555
Target:  5'- cCCGGCcccAUCGUCuCGCGUCGCCcGCcuuccccccgUGCg -3'
miRNA:   3'- -GGCUG---UAGCGGcGCGCGGUGG-CG----------ACG- -5'
31015 3' -60.5 NC_006560.1 + 86263 0.66 0.764555
Target:  5'- -gGGCccCGgCGCGCGCaugGCCGCgGCc -3'
miRNA:   3'- ggCUGuaGCgGCGCGCGg--UGGCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 88902 0.66 0.764555
Target:  5'- gCCGG-GUCGCCGgccggcCGUGCCugucgcucccggGCgCGCUGCg -3'
miRNA:   3'- -GGCUgUAGCGGC------GCGCGG------------UG-GCGACG- -5'
31015 3' -60.5 NC_006560.1 + 126414 0.66 0.764555
Target:  5'- nCGcGCAUggaGCCGCGCGCgCGCCGgaucGCc -3'
miRNA:   3'- gGC-UGUAg--CGGCGCGCG-GUGGCga--CG- -5'
31015 3' -60.5 NC_006560.1 + 128063 0.66 0.764555
Target:  5'- uUGACG-CGCUGCugauGCGCC--UGCUGCg -3'
miRNA:   3'- gGCUGUaGCGGCG----CGCGGugGCGACG- -5'
31015 3' -60.5 NC_006560.1 + 128483 0.66 0.764555
Target:  5'- gCGACGUgGCCacgugGgGCGaCUACCGCgugGUg -3'
miRNA:   3'- gGCUGUAgCGG-----CgCGC-GGUGGCGa--CG- -5'
31015 3' -60.5 NC_006560.1 + 121260 0.66 0.764555
Target:  5'- gCGACGUCGaCCuugGCGCGCUucuucaGCgGCccgGCg -3'
miRNA:   3'- gGCUGUAGC-GG---CGCGCGG------UGgCGa--CG- -5'
31015 3' -60.5 NC_006560.1 + 65831 0.66 0.764555
Target:  5'- aCCGACccgaagCGCucCGUGUGCCGCaUGCaGCg -3'
miRNA:   3'- -GGCUGua----GCG--GCGCGCGGUG-GCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 31183 0.66 0.764555
Target:  5'- cCCGACG-CGCCGgccCGC-CCGgCGCaGCu -3'
miRNA:   3'- -GGCUGUaGCGGC---GCGcGGUgGCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 25169 0.66 0.764555
Target:  5'- cCUGGCGcUgGaCCGCGCgGCCGCgCGCgccggGCc -3'
miRNA:   3'- -GGCUGU-AgC-GGCGCG-CGGUG-GCGa----CG- -5'
31015 3' -60.5 NC_006560.1 + 21245 0.66 0.764555
Target:  5'- aCCGGgGaCGCCGCGCaGgCGCgGUgaggGCg -3'
miRNA:   3'- -GGCUgUaGCGGCGCG-CgGUGgCGa---CG- -5'
31015 3' -60.5 NC_006560.1 + 10708 0.66 0.764555
Target:  5'- aCGuCGUCGCCG-GCGCU--CGCgUGCu -3'
miRNA:   3'- gGCuGUAGCGGCgCGCGGugGCG-ACG- -5'
31015 3' -60.5 NC_006560.1 + 26385 0.66 0.755414
Target:  5'- cCCGGCcggggCGCagggGCGCGCCcCCGg-GCg -3'
miRNA:   3'- -GGCUGua---GCGg---CGCGCGGuGGCgaCG- -5'
31015 3' -60.5 NC_006560.1 + 22720 0.66 0.755414
Target:  5'- gCCGcuuCAcgGCCGCGCgGCCGCgGCccgUGCc -3'
miRNA:   3'- -GGCu--GUagCGGCGCG-CGGUGgCG---ACG- -5'
31015 3' -60.5 NC_006560.1 + 129636 0.66 0.755414
Target:  5'- gCCGGCGggGCCGUGgGCgaggcggagCACgCGCUGa -3'
miRNA:   3'- -GGCUGUagCGGCGCgCG---------GUG-GCGACg -5'
31015 3' -60.5 NC_006560.1 + 101762 0.66 0.755414
Target:  5'- gCGGCcgCGUCGCGgggcaCGUCGCCGgggGCg -3'
miRNA:   3'- gGCUGuaGCGGCGC-----GCGGUGGCga-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.