miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31015 5' -58.3 NC_006560.1 + 33817 0.66 0.831275
Target:  5'- aCG-GGGGGCgGGGgUCgGCGGggGUCGg -3'
miRNA:   3'- aGCaCCUCUG-CCCgAGaCGCCa-CAGU- -5'
31015 5' -58.3 NC_006560.1 + 99886 0.66 0.797097
Target:  5'- gUCGUGGcggcGGCGGGCggcGCGGgguucaUGUCGg -3'
miRNA:   3'- -AGCACCu---CUGCCCGagaCGCC------ACAGU- -5'
31015 5' -58.3 NC_006560.1 + 8541 0.67 0.788172
Target:  5'- gCGUGGugggGGugGGGCgacuguggCUGCGGcgaucccGUCAg -3'
miRNA:   3'- aGCACC----UCugCCCGa-------GACGCCa------CAGU- -5'
31015 5' -58.3 NC_006560.1 + 89774 0.67 0.760616
Target:  5'- gUCGUcGGGucccgcacGAcCGGGCUCgggggcacgGCGGUGUCc -3'
miRNA:   3'- -AGCA-CCU--------CU-GCCCGAGa--------CGCCACAGu -5'
31015 5' -58.3 NC_006560.1 + 122705 0.69 0.662937
Target:  5'- cUCGUGGGGguccACcGGCUCUGCagcccGGUGUUc -3'
miRNA:   3'- -AGCACCUC----UGcCCGAGACG-----CCACAGu -5'
31015 5' -58.3 NC_006560.1 + 52603 0.69 0.632779
Target:  5'- -gGUGGcGACGGGCgggCUGCGGa---- -3'
miRNA:   3'- agCACCuCUGCCCGa--GACGCCacagu -5'
31015 5' -58.3 NC_006560.1 + 116525 0.69 0.632779
Target:  5'- gCGUGGAGGCGGGCg--GCGaUGgCGa -3'
miRNA:   3'- aGCACCUCUGCCCGagaCGCcACaGU- -5'
31015 5' -58.3 NC_006560.1 + 107251 0.7 0.612659
Target:  5'- cUCGUGGGGGCGGuGUUUaUGCGGUa--- -3'
miRNA:   3'- -AGCACCUCUGCC-CGAG-ACGCCAcagu -5'
31015 5' -58.3 NC_006560.1 + 11116 0.7 0.592595
Target:  5'- gCGggGGGGGgGGGCUCaGCGGgcGUCGa -3'
miRNA:   3'- aGCa-CCUCUgCCCGAGaCGCCa-CAGU- -5'
31015 5' -58.3 NC_006560.1 + 15132 0.71 0.551867
Target:  5'- uUCGUGGucGCGGGCUCUGggccccccgccccCGGcGUCu -3'
miRNA:   3'- -AGCACCucUGCCCGAGAC-------------GCCaCAGu -5'
31015 5' -58.3 NC_006560.1 + 139034 0.73 0.405203
Target:  5'- cUUGUGGcuGGgGGGCUC-GCGGUGUCc -3'
miRNA:   3'- -AGCACCu-CUgCCCGAGaCGCCACAGu -5'
31015 5' -58.3 NC_006560.1 + 139839 0.77 0.247675
Target:  5'- gCGUGcGAGGCGGGCUCUccgcgGCGGaccGUCAg -3'
miRNA:   3'- aGCAC-CUCUGCCCGAGA-----CGCCa--CAGU- -5'
31015 5' -58.3 NC_006560.1 + 114605 1.09 0.001802
Target:  5'- aUCGUGGAGACGGGCUCUGCGGUGUCAa -3'
miRNA:   3'- -AGCACCUCUGCCCGAGACGCCACAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.