miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31021 3' -62.1 NC_006560.1 + 135376 0.66 0.67682
Target:  5'- -nGCCaCGCgggggggcggaGGCCGCGggggUGUCGCUCGGc -3'
miRNA:   3'- agCGG-GUGg----------CCGGCGU----GCAGCGAGUC- -5'
31021 3' -62.1 NC_006560.1 + 48414 0.66 0.67682
Target:  5'- gCGCCCACgGGa-GCGCGccguuucccUCGCUCc- -3'
miRNA:   3'- aGCGGGUGgCCggCGUGC---------AGCGAGuc -5'
31021 3' -62.1 NC_006560.1 + 28491 0.66 0.67682
Target:  5'- cCGCCC-CgGGCCGCGCccccUCGC-CGc -3'
miRNA:   3'- aGCGGGuGgCCGGCGUGc---AGCGaGUc -5'
31021 3' -62.1 NC_006560.1 + 36769 0.66 0.67682
Target:  5'- gUCGCCCGCCGcggacGCCGC-CuUCGUgucuauugacaUCGGg -3'
miRNA:   3'- -AGCGGGUGGC-----CGGCGuGcAGCG-----------AGUC- -5'
31021 3' -62.1 NC_006560.1 + 100224 0.66 0.67682
Target:  5'- gCGCCCGCCGaGCC-CGa---GCUCGGc -3'
miRNA:   3'- aGCGGGUGGC-CGGcGUgcagCGAGUC- -5'
31021 3' -62.1 NC_006560.1 + 118268 0.66 0.67682
Target:  5'- gCGCCgCcCCGGCCGUgGCGUCcggGCUCc- -3'
miRNA:   3'- aGCGG-GuGGCCGGCG-UGCAG---CGAGuc -5'
31021 3' -62.1 NC_006560.1 + 56120 0.66 0.67682
Target:  5'- cUCGCCCGcCCGGUCggggGCGCuGUCGUagacCAGc -3'
miRNA:   3'- -AGCGGGU-GGCCGG----CGUG-CAGCGa---GUC- -5'
31021 3' -62.1 NC_006560.1 + 79500 0.66 0.67682
Target:  5'- cCGCgCCGCCGcGCCGCccggcccacCGUCgGCUCc- -3'
miRNA:   3'- aGCG-GGUGGC-CGGCGu--------GCAG-CGAGuc -5'
31021 3' -62.1 NC_006560.1 + 74086 0.66 0.675848
Target:  5'- -gGCCgACCuGGCgGCcuggcugGCGUCGCUgGGc -3'
miRNA:   3'- agCGGgUGG-CCGgCG-------UGCAGCGAgUC- -5'
31021 3' -62.1 NC_006560.1 + 16426 0.66 0.666114
Target:  5'- cCGCCCgcGCCGGCUcccuuuuGUACGgggccgCGCUCc- -3'
miRNA:   3'- aGCGGG--UGGCCGG-------CGUGCa-----GCGAGuc -5'
31021 3' -62.1 NC_006560.1 + 63053 0.66 0.657331
Target:  5'- cUCGCCCucguACCGGggGCGCG-CGCcCGGg -3'
miRNA:   3'- -AGCGGG----UGGCCggCGUGCaGCGaGUC- -5'
31021 3' -62.1 NC_006560.1 + 102441 0.66 0.657331
Target:  5'- cUCGgCCGCCgcGGCCGC-CGUCuC-CAGg -3'
miRNA:   3'- -AGCgGGUGG--CCGGCGuGCAGcGaGUC- -5'
31021 3' -62.1 NC_006560.1 + 122617 0.66 0.657331
Target:  5'- cUCGCCCACCGGgcugacccgcCCGCcccuGCGgccCGCggGGg -3'
miRNA:   3'- -AGCGGGUGGCC----------GGCG----UGCa--GCGagUC- -5'
31021 3' -62.1 NC_006560.1 + 146093 0.66 0.657331
Target:  5'- -gGCCCACugCGGCUcCGCGUCgGC-CAGg -3'
miRNA:   3'- agCGGGUG--GCCGGcGUGCAG-CGaGUC- -5'
31021 3' -62.1 NC_006560.1 + 101491 0.66 0.656354
Target:  5'- gUCGgCC-CCGGaggccccCCGCGCGaUCGcCUCGGa -3'
miRNA:   3'- -AGCgGGuGGCC-------GGCGUGC-AGC-GAGUC- -5'
31021 3' -62.1 NC_006560.1 + 105998 0.66 0.651466
Target:  5'- -gGCCCGCCGccgggcaagcgguaCCGCACGuUCGUccUCGGg -3'
miRNA:   3'- agCGGGUGGCc-------------GGCGUGC-AGCG--AGUC- -5'
31021 3' -62.1 NC_006560.1 + 78308 0.66 0.651466
Target:  5'- aCGCCCucuACCGGCCcucgggccagcgcguGCugGUcCGCggCGGc -3'
miRNA:   3'- aGCGGG---UGGCCGG---------------CGugCA-GCGa-GUC- -5'
31021 3' -62.1 NC_006560.1 + 85050 0.66 0.647554
Target:  5'- -gGCCCACgugUGGCagaGCACGUuugUGCUCGu -3'
miRNA:   3'- agCGGGUG---GCCGg--CGUGCA---GCGAGUc -5'
31021 3' -62.1 NC_006560.1 + 54081 0.66 0.647554
Target:  5'- cCGCCC-CCGGCCGC----CGC-CGGg -3'
miRNA:   3'- aGCGGGuGGCCGGCGugcaGCGaGUC- -5'
31021 3' -62.1 NC_006560.1 + 52388 0.66 0.647554
Target:  5'- uUC-CUCACCGGCgccgCGCGCGcCGCgCAGc -3'
miRNA:   3'- -AGcGGGUGGCCG----GCGUGCaGCGaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.