miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31352 3' -54.8 NC_006623.1 + 1379 0.66 0.916292
Target:  5'- uGGCGGCacCCAGAUaCCUCGGagagcuUGGAUa -3'
miRNA:   3'- cUCGCCG--GGUUUA-GGAGCCg-----ACUUAa -5'
31352 3' -54.8 NC_006623.1 + 118730 0.68 0.836294
Target:  5'- gGAGCGG-CCAAAUUaCUCGGCgucgagGAAUc -3'
miRNA:   3'- -CUCGCCgGGUUUAG-GAGCCGa-----CUUAa -5'
31352 3' -54.8 NC_006623.1 + 142882 0.68 0.836294
Target:  5'- gGAGCGG-CCAAAUUaCUCGGCgucgagGAAUc -3'
miRNA:   3'- -CUCGCCgGGUUUAG-GAGCCGa-----CUUAa -5'
31352 3' -54.8 NC_006623.1 + 115584 0.69 0.782109
Target:  5'- -uGCGGCCCGGGUCUuucucgUCGGgaGGGa- -3'
miRNA:   3'- cuCGCCGGGUUUAGG------AGCCgaCUUaa -5'
31352 3' -54.8 NC_006623.1 + 146028 0.69 0.782109
Target:  5'- -uGCGGCCCGGGUCUuucucgUCGGgaGGGa- -3'
miRNA:   3'- cuCGCCGGGUUUAGG------AGCCgaCUUaa -5'
31352 3' -54.8 NC_006623.1 + 56297 0.69 0.752963
Target:  5'- cAGgGGCCuCGAAgaCUCGGCUGAGa- -3'
miRNA:   3'- cUCgCCGG-GUUUagGAGCCGACUUaa -5'
31352 3' -54.8 NC_006623.1 + 144238 0.7 0.7228
Target:  5'- gGAGCGGCCgUGGAUCCUaCGGCg----- -3'
miRNA:   3'- -CUCGCCGG-GUUUAGGA-GCCGacuuaa -5'
31352 3' -54.8 NC_006623.1 + 117374 0.7 0.7228
Target:  5'- gGAGCGGCCgUGGAUCCUaCGGCg----- -3'
miRNA:   3'- -CUCGCCGG-GUUUAGGA-GCCGacuuaa -5'
31352 3' -54.8 NC_006623.1 + 75 0.72 0.618364
Target:  5'- cGAGauuCGGCCCAAAUCCUCGGauaAAUUu -3'
miRNA:   3'- -CUC---GCCGGGUUUAGGAGCCgacUUAA- -5'
31352 3' -54.8 NC_006623.1 + 1024 0.73 0.555628
Target:  5'- cGAGauuCGGCCCAAAUCCUCGGauaAAUUa -3'
miRNA:   3'- -CUC---GCCGGGUUUAGGAGCCgacUUAA- -5'
31352 3' -54.8 NC_006623.1 + 792 1.06 0.004785
Target:  5'- uGAGCGGCCCAAAUCCUCGGCUGAAUUg -3'
miRNA:   3'- -CUCGCCGGGUUUAGGAGCCGACUUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.