miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31616 5' -55.9 NC_006879.1 + 8269 0.66 0.505747
Target:  5'- aGGACccgGGGGCCgGUGGUCUucacgcagagacGGCACaUCCa -3'
miRNA:   3'- -UUUGa--CCCUGG-CGCUAGG------------UCGUG-AGG- -5'
31616 5' -55.9 NC_006879.1 + 17841 0.66 0.494986
Target:  5'- -uACUcGGGuACCGCGuacaauUCCcuggcucccaagGGCGCUCCc -3'
miRNA:   3'- uuUGA-CCC-UGGCGCu-----AGG------------UCGUGAGG- -5'
31616 5' -55.9 NC_006879.1 + 14667 0.67 0.439842
Target:  5'- gGGACUGGGcuccggcaagauguACgGCGGagCCaaaaGGCGCUCCa -3'
miRNA:   3'- -UUUGACCC--------------UGgCGCUa-GG----UCGUGAGG- -5'
31616 5' -55.9 NC_006879.1 + 24662 0.68 0.413126
Target:  5'- gGGGCgucgGGGGCCGgGGcUUCGGCugUCg -3'
miRNA:   3'- -UUUGa---CCCUGGCgCU-AGGUCGugAGg -5'
31616 5' -55.9 NC_006879.1 + 11340 0.68 0.384646
Target:  5'- cGGACgGGGccACCGCgGAUCCcGCACUUUu -3'
miRNA:   3'- -UUUGaCCC--UGGCG-CUAGGuCGUGAGG- -5'
31616 5' -55.9 NC_006879.1 + 15126 0.69 0.366395
Target:  5'- -uACUGGGugCGCGAUUCugugacGGgAgUCCg -3'
miRNA:   3'- uuUGACCCugGCGCUAGG------UCgUgAGG- -5'
31616 5' -55.9 NC_006879.1 + 20819 0.7 0.315308
Target:  5'- cGACcugGGGGCUGUGAagcaugcugUUgGGCACUCCg -3'
miRNA:   3'- uUUGa--CCCUGGCGCU---------AGgUCGUGAGG- -5'
31616 5' -55.9 NC_006879.1 + 21723 0.71 0.284345
Target:  5'- -uGCUGGGuACUGCGAugcUCCcauacGGCGCaUCCg -3'
miRNA:   3'- uuUGACCC-UGGCGCU---AGG-----UCGUG-AGG- -5'
31616 5' -55.9 NC_006879.1 + 17867 1.08 0.000464
Target:  5'- aAAACUGGGACCGCGAUCCAGCACUCCc -3'
miRNA:   3'- -UUUGACCCUGGCGCUAGGUCGUGAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.