miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31673 3' -47.2 NC_006883.1 + 179988 0.66 0.999981
Target:  5'- cAUUGGUAGGUUGAauccaUUCUuuaaAUUCUUGuCGa -3'
miRNA:   3'- -UGACCAUUCAGCU-----AAGA----UGAGAAC-GC- -5'
31673 3' -47.2 NC_006883.1 + 206410 0.67 0.999954
Target:  5'- --aGGUGAGaUgGAcaCUACUCUUGCu -3'
miRNA:   3'- ugaCCAUUC-AgCUaaGAUGAGAACGc -5'
31673 3' -47.2 NC_006883.1 + 235932 0.68 0.999863
Target:  5'- uGCUGGUGguGGUgcuucUGGUUCUGCagaaUCUUGUGc -3'
miRNA:   3'- -UGACCAU--UCA-----GCUAAGAUG----AGAACGC- -5'
31673 3' -47.2 NC_006883.1 + 145066 1.11 0.026636
Target:  5'- gACUGGUAAGUCGAUUCUACUCUUGCGa -3'
miRNA:   3'- -UGACCAUUCAGCUAAGAUGAGAACGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.