Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31720 | 5' | -59.1 | NC_006938.1 | + | 39961 | 0.7 | 0.344638 |
Target: 5'- aCGGCaacuuccucaccUCCGUCGCCCACGgCuUCAc- -3' miRNA: 3'- gGCCG------------AGGCAGCGGGUGUgGcAGUag -5' |
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31720 | 5' | -59.1 | NC_006938.1 | + | 57211 | 0.7 | 0.336792 |
Target: 5'- uCCGGCUCgUGgacagCGacgagaCCGcCACCGUCAUCg -3' miRNA: 3'- -GGCCGAG-GCa----GCg-----GGU-GUGGCAGUAG- -5' |
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31720 | 5' | -59.1 | NC_006938.1 | + | 30802 | 0.71 | 0.31404 |
Target: 5'- -gGGCUCCGUcCGCCUcCugCGUC-UCc -3' miRNA: 3'- ggCCGAGGCA-GCGGGuGugGCAGuAG- -5' |
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31720 | 5' | -59.1 | NC_006938.1 | + | 45019 | 0.71 | 0.313302 |
Target: 5'- cUCGGCUCCugcugggaguaGUcgagggcCGCCCAgaggcCACCGUCGUCc -3' miRNA: 3'- -GGCCGAGG-----------CA-------GCGGGU-----GUGGCAGUAG- -5' |
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31720 | 5' | -59.1 | NC_006938.1 | + | 33689 | 0.71 | 0.29953 |
Target: 5'- uCUGGCUCCGcUCGgCCAUcacaGCCG-CGUCc -3' miRNA: 3'- -GGCCGAGGC-AGCgGGUG----UGGCaGUAG- -5' |
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31720 | 5' | -59.1 | NC_006938.1 | + | 63364 | 0.72 | 0.259126 |
Target: 5'- gCGGCgagCCgGUCGCCCACGCgGUgGa- -3' miRNA: 3'- gGCCGa--GG-CAGCGGGUGUGgCAgUag -5' |
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31720 | 5' | -59.1 | NC_006938.1 | + | 34599 | 0.72 | 0.259126 |
Target: 5'- aCCGGCUCUGUccCGCCCAgGCCa----- -3' miRNA: 3'- -GGCCGAGGCA--GCGGGUgUGGcaguag -5' |
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31720 | 5' | -59.1 | NC_006938.1 | + | 49478 | 0.74 | 0.212308 |
Target: 5'- gUCGGCcgCCGUCGaCgACACCGUCuUCg -3' miRNA: 3'- -GGCCGa-GGCAGCgGgUGUGGCAGuAG- -5' |
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31720 | 5' | -59.1 | NC_006938.1 | + | 41922 | 0.74 | 0.191745 |
Target: 5'- gCGGCcCaCGUCGCCCugguCACCGcCGUCc -3' miRNA: 3'- gGCCGaG-GCAGCGGGu---GUGGCaGUAG- -5' |
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31720 | 5' | -59.1 | NC_006938.1 | + | 15414 | 0.75 | 0.168515 |
Target: 5'- aCCGuCUCCGUCGCCUGCcgaacgACCGUCgcGUCg -3' miRNA: 3'- -GGCcGAGGCAGCGGGUG------UGGCAG--UAG- -5' |
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31720 | 5' | -59.1 | NC_006938.1 | + | 55112 | 1.1 | 0.000499 |
Target: 5'- uCCGGCUCCGUCGCCCACACCGUCAUCu -3' miRNA: 3'- -GGCCGAGGCAGCGGGUGUGGCAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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