miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31738 3' -57.2 NC_006938.1 + 58572 0.66 0.67924
Target:  5'- aUCGGUGGggcGCUCGUggaUGG-CCUGg -3'
miRNA:   3'- gGGCCAUCa--CGAGCGag-ACCaGGACg -5'
31738 3' -57.2 NC_006938.1 + 16190 0.66 0.657966
Target:  5'- uCCUGGaacaUGCucaaccUCGCgCUGGUCCUGUu -3'
miRNA:   3'- -GGGCCauc-ACG------AGCGaGACCAGGACG- -5'
31738 3' -57.2 NC_006938.1 + 28025 0.66 0.636602
Target:  5'- -gCGaGUGGUGCauggaGCUCUGGUUCgaUGCc -3'
miRNA:   3'- ggGC-CAUCACGag---CGAGACCAGG--ACG- -5'
31738 3' -57.2 NC_006938.1 + 6606 0.66 0.636602
Target:  5'- -aCGGgcGUGCUCaGCUCUGuG-CCauUGCu -3'
miRNA:   3'- ggGCCauCACGAG-CGAGAC-CaGG--ACG- -5'
31738 3' -57.2 NC_006938.1 + 43230 0.67 0.615222
Target:  5'- aCCCGGccAGUGCcuUCGCggCgaacagcacggUGGcCCUGCa -3'
miRNA:   3'- -GGGCCa-UCACG--AGCGa-G-----------ACCaGGACG- -5'
31738 3' -57.2 NC_006938.1 + 23348 0.69 0.510407
Target:  5'- cCCCGucacgcauGUGCUCcacgauGCUCUGGUCCgugaccugUGCa -3'
miRNA:   3'- -GGGCcau-----CACGAG------CGAGACCAGG--------ACG- -5'
31738 3' -57.2 NC_006938.1 + 50390 0.71 0.369853
Target:  5'- uCCCGGUGGUGCcgggUGCgaaCcGG-CCUGCc -3'
miRNA:   3'- -GGGCCAUCACGa---GCGa--GaCCaGGACG- -5'
31738 3' -57.2 NC_006938.1 + 40494 1.14 0.000395
Target:  5'- gCCCGGUAGUGCUCGCUCUGGUCCUGCa -3'
miRNA:   3'- -GGGCCAUCACGAGCGAGACCAGGACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.