miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31743 5' -52.4 NC_006938.1 + 28655 0.66 0.890854
Target:  5'- cACGUGGC-UGGagCUCCgUCGCgGCugGg -3'
miRNA:   3'- -UGUACUGcAUCaaGAGG-AGCG-CGugC- -5'
31743 5' -52.4 NC_006938.1 + 36076 0.66 0.875753
Target:  5'- -gGUGACGgagaccgGGUauccgcucuccaUCUCCUCGUGCuccuCGg -3'
miRNA:   3'- ugUACUGCa------UCA------------AGAGGAGCGCGu---GC- -5'
31743 5' -52.4 NC_006938.1 + 27904 0.66 0.875753
Target:  5'- ---cGACGgacAGcaUCUCCUCGCGcCACa -3'
miRNA:   3'- uguaCUGCa--UCa-AGAGGAGCGC-GUGc -5'
31743 5' -52.4 NC_006938.1 + 24949 0.66 0.867817
Target:  5'- cACGUGAUGUuaggCUCCUguuaaccaaCGCGUGCGa -3'
miRNA:   3'- -UGUACUGCAucaaGAGGA---------GCGCGUGC- -5'
31743 5' -52.4 NC_006938.1 + 27505 0.67 0.823643
Target:  5'- ---cGACGUAGaUCUCCUCcucgaagagggugGCGUugGc -3'
miRNA:   3'- uguaCUGCAUCaAGAGGAG-------------CGCGugC- -5'
31743 5' -52.4 NC_006938.1 + 37823 1.08 0.002666
Target:  5'- cACAUGACGUAGUUCUCCUCGCGCACGu -3'
miRNA:   3'- -UGUACUGCAUCAAGAGGAGCGCGUGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.