miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31750 3' -58.1 NC_006938.1 + 30731 0.66 0.654074
Target:  5'- uGCCCUCGAgCCaCGCGgccagcuugGCGGggUugucGGCc -3'
miRNA:   3'- gUGGGAGCU-GGcGCGC---------UGCCuuG----UCG- -5'
31750 3' -58.1 NC_006938.1 + 17811 0.66 0.654074
Target:  5'- gACCCUcaugaucgaggCGGCC-CGCGccuauggcauGCGGAaggACAGCg -3'
miRNA:   3'- gUGGGA-----------GCUGGcGCGC----------UGCCU---UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 35177 0.66 0.643503
Target:  5'- uGCCgggUUGACCGUguaggGCGGCcggaGGGACAGCu -3'
miRNA:   3'- gUGGg--AGCUGGCG-----CGCUG----CCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 49610 0.66 0.643503
Target:  5'- uGCUgagCUCGGCCcCGCu-CGGAACGGUg -3'
miRNA:   3'- gUGG---GAGCUGGcGCGcuGCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 4424 0.66 0.643503
Target:  5'- uGCCCUgGgcaaguuuGCCGUGCGcuuugACGGGuccauCAGCg -3'
miRNA:   3'- gUGGGAgC--------UGGCGCGC-----UGCCUu----GUCG- -5'
31750 3' -58.1 NC_006938.1 + 26814 0.66 0.632923
Target:  5'- gCACUCUCGugGCCGUcaaGGCGGucaugAACGGCa -3'
miRNA:   3'- -GUGGGAGC--UGGCGcg-CUGCC-----UUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 21655 0.66 0.632923
Target:  5'- --aCgUgGGCCGCGCG-CGGGucCAGCu -3'
miRNA:   3'- gugGgAgCUGGCGCGCuGCCUu-GUCG- -5'
31750 3' -58.1 NC_006938.1 + 42728 0.66 0.632923
Target:  5'- cCACCucgcgcuguguCUUGcCCGCGCGGCGG--CGGUa -3'
miRNA:   3'- -GUGG-----------GAGCuGGCGCGCUGCCuuGUCG- -5'
31750 3' -58.1 NC_006938.1 + 11256 0.66 0.632923
Target:  5'- cCGCCCU-GGCCGC-CGAUGaGGAUcgAGCc -3'
miRNA:   3'- -GUGGGAgCUGGCGcGCUGC-CUUG--UCG- -5'
31750 3' -58.1 NC_006938.1 + 10533 0.66 0.626574
Target:  5'- uCACCCUCacggacgaguacauGCCGCuGCuGACGGAcgguccCAGCa -3'
miRNA:   3'- -GUGGGAGc-------------UGGCG-CG-CUGCCUu-----GUCG- -5'
31750 3' -58.1 NC_006938.1 + 53100 0.66 0.622342
Target:  5'- aCGCCCUUGACauCaCGGCGGaGugGGCg -3'
miRNA:   3'- -GUGGGAGCUGgcGcGCUGCC-UugUCG- -5'
31750 3' -58.1 NC_006938.1 + 37290 0.66 0.622342
Target:  5'- aCACCCUgGAagGUGuCGACGaGAGCAucGCa -3'
miRNA:   3'- -GUGGGAgCUggCGC-GCUGC-CUUGU--CG- -5'
31750 3' -58.1 NC_006938.1 + 29248 0.66 0.622342
Target:  5'- aACCUgcacgaggcaaUCGGCCGCGCcguuuGCGGc-CAGCg -3'
miRNA:   3'- gUGGG-----------AGCUGGCGCGc----UGCCuuGUCG- -5'
31750 3' -58.1 NC_006938.1 + 39808 0.66 0.611769
Target:  5'- gGCCCUCcgucuGACCcucCGgGACGGGucaguuguucGCGGCa -3'
miRNA:   3'- gUGGGAG-----CUGGc--GCgCUGCCU----------UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 24372 0.66 0.611769
Target:  5'- gCACCCUC-AgCGCGUGuccauccUGGAGCAGg -3'
miRNA:   3'- -GUGGGAGcUgGCGCGCu------GCCUUGUCg -5'
31750 3' -58.1 NC_006938.1 + 22500 0.66 0.605433
Target:  5'- gACCCggccacggaggaggCGAgUGCGCucccgaGACGcGAACAGCg -3'
miRNA:   3'- gUGGGa-------------GCUgGCGCG------CUGC-CUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 23667 0.66 0.599104
Target:  5'- --aCCUCGugCcgaagcaGCGCGACGucggccaGGGCGGCa -3'
miRNA:   3'- gugGGAGCugG-------CGCGCUGC-------CUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 8354 0.67 0.59068
Target:  5'- gGCCagauCUgGAUCGCgGCGGCGGAcgcGCAGg -3'
miRNA:   3'- gUGG----GAgCUGGCG-CGCUGCCU---UGUCg -5'
31750 3' -58.1 NC_006938.1 + 44873 0.67 0.59068
Target:  5'- cCACCUUggcaCGGCuCcCGCGAcCGGGACAGUc -3'
miRNA:   3'- -GUGGGA----GCUG-GcGCGCU-GCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 51468 0.67 0.59068
Target:  5'- aCAUCCUCG-UCGCGgcCGGagcCGGGGCAGUc -3'
miRNA:   3'- -GUGGGAGCuGGCGC--GCU---GCCUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.