Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31759 | 3' | -55 | NC_006938.1 | + | 14940 | 0.65 | 0.772925 |
Target: 5'- gGAGGugGCGCCAuu--UGUCaa-GGCg -3' miRNA: 3'- -UUCCugCGCGGUcacuACAGcaaCCG- -5' |
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31759 | 3' | -55 | NC_006938.1 | + | 40888 | 0.66 | 0.762781 |
Target: 5'- gGAGGuaguuCGgGCaccgGGUGAUGUCGaccccUUGGCc -3' miRNA: 3'- -UUCCu----GCgCGg---UCACUACAGC-----AACCG- -5' |
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31759 | 3' | -55 | NC_006938.1 | + | 47979 | 0.66 | 0.752503 |
Target: 5'- -cGuACGCuccCCAGaUGAUGUCGUUGGa -3' miRNA: 3'- uuCcUGCGc--GGUC-ACUACAGCAACCg -5' |
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31759 | 3' | -55 | NC_006938.1 | + | 9757 | 0.66 | 0.749395 |
Target: 5'- cAGG--GUGCCAGUGGcUccaacggagcuucgGUCGUUGGCa -3' miRNA: 3'- uUCCugCGCGGUCACU-A--------------CAGCAACCG- -5' |
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31759 | 3' | -55 | NC_006938.1 | + | 61643 | 0.66 | 0.73159 |
Target: 5'- uGGGucACGCaGCCGGUGGUGUaGUUGa- -3' miRNA: 3'- uUCC--UGCG-CGGUCACUACAgCAACcg -5' |
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31759 | 3' | -55 | NC_006938.1 | + | 12489 | 0.67 | 0.699502 |
Target: 5'- --uGAUGacaGUCGG-GAUGUUGUUGGCg -3' miRNA: 3'- uucCUGCg--CGGUCaCUACAGCAACCG- -5' |
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31759 | 3' | -55 | NC_006938.1 | + | 20501 | 0.67 | 0.666825 |
Target: 5'- -cGGGCGaguuGCCAGcGAUGUCcuugGGCa -3' miRNA: 3'- uuCCUGCg---CGGUCaCUACAGcaa-CCG- -5' |
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31759 | 3' | -55 | NC_006938.1 | + | 50372 | 0.68 | 0.633853 |
Target: 5'- -cGGACGCGCCugucccacucccGGUGGUGcCGgguGCg -3' miRNA: 3'- uuCCUGCGCGG------------UCACUACaGCaacCG- -5' |
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31759 | 3' | -55 | NC_006938.1 | + | 58563 | 0.69 | 0.578991 |
Target: 5'- -cGGACGCGCauCGGUGggGcgcUCGUggaUGGCc -3' miRNA: 3'- uuCCUGCGCG--GUCACuaC---AGCA---ACCG- -5' |
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31759 | 3' | -55 | NC_006938.1 | + | 39049 | 0.69 | 0.578991 |
Target: 5'- cAGGACGaCGgcaCCGcUGGUGUCGcUGGCa -3' miRNA: 3'- uUCCUGC-GC---GGUcACUACAGCaACCG- -5' |
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31759 | 3' | -55 | NC_006938.1 | + | 40117 | 0.7 | 0.48359 |
Target: 5'- -cGGACaGCGCCGGUcagccgGGUGUCGc-GGCc -3' miRNA: 3'- uuCCUG-CGCGGUCA------CUACAGCaaCCG- -5' |
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31759 | 3' | -55 | NC_006938.1 | + | 52432 | 0.72 | 0.387342 |
Target: 5'- gGGGGACGgGCgGGUcGGUGUCG--GGCg -3' miRNA: 3'- -UUCCUGCgCGgUCA-CUACAGCaaCCG- -5' |
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31759 | 3' | -55 | NC_006938.1 | + | 24773 | 1.1 | 0.000942 |
Target: 5'- gAAGGACGCGCCAGUGAUGUCGUUGGCg -3' miRNA: 3'- -UUCCUGCGCGGUCACUACAGCAACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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