miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31776 5' -57 NC_006938.1 + 4522 0.66 0.673741
Target:  5'- gGUCAGGgugauuCCAGCCGUcggaggggaggcaccGUCGUCGGc-- -3'
miRNA:   3'- gCGGUCC------GGUCGGCA---------------UAGCAGCUaca -5'
31776 5' -57 NC_006938.1 + 31727 0.66 0.669456
Target:  5'- aGCCAGGgCAGCCGg--UGUCu---- -3'
miRNA:   3'- gCGGUCCgGUCGGCauaGCAGcuaca -5'
31776 5' -57 NC_006938.1 + 20577 0.67 0.583454
Target:  5'- uCGCCAGGUC-GUCG-AUCGUCG-UGc -3'
miRNA:   3'- -GCGGUCCGGuCGGCaUAGCAGCuACa -5'
31776 5' -57 NC_006938.1 + 28282 0.67 0.583454
Target:  5'- aGCCAGGauuguacuggCAGUCgGUGUCGUCGAg-- -3'
miRNA:   3'- gCGGUCCg---------GUCGG-CAUAGCAGCUaca -5'
31776 5' -57 NC_006938.1 + 26833 0.68 0.562171
Target:  5'- aGCCA-GCCGguuGCCGaUGUCGUCGAc-- -3'
miRNA:   3'- gCGGUcCGGU---CGGC-AUAGCAGCUaca -5'
31776 5' -57 NC_006938.1 + 56063 0.68 0.551607
Target:  5'- gGCCGGauGCCAGCCac-UCGUCGAc-- -3'
miRNA:   3'- gCGGUC--CGGUCGGcauAGCAGCUaca -5'
31776 5' -57 NC_006938.1 + 40123 0.68 0.530668
Target:  5'- gCGCC-GGUCAGCCGgg-UGUCGcgGc -3'
miRNA:   3'- -GCGGuCCGGUCGGCauaGCAGCuaCa -5'
31776 5' -57 NC_006938.1 + 28658 0.68 0.520307
Target:  5'- gGaCCAGGUCGGCCGgggcgaacgUGUUGUCGAc-- -3'
miRNA:   3'- gC-GGUCCGGUCGGC---------AUAGCAGCUaca -5'
31776 5' -57 NC_006938.1 + 51487 0.69 0.489728
Target:  5'- aGCCGGGgCAGUCGaggcgAUCGUCGccgcGUGg -3'
miRNA:   3'- gCGGUCCgGUCGGCa----UAGCAGC----UACa -5'
31776 5' -57 NC_006938.1 + 15694 0.69 0.469814
Target:  5'- gGUCGGGUCGGCCGUG--GUCGAc-- -3'
miRNA:   3'- gCGGUCCGGUCGGCAUagCAGCUaca -5'
31776 5' -57 NC_006938.1 + 48211 0.69 0.466862
Target:  5'- cCGCCAGcGCCAGCCGUaggcuccccacaugGucucuccgUCGUCGGa-- -3'
miRNA:   3'- -GCGGUC-CGGUCGGCA--------------U--------AGCAGCUaca -5'
31776 5' -57 NC_006938.1 + 14181 0.71 0.351819
Target:  5'- uGCCAccGGCUcGCCGUcAUCGUCGAUc- -3'
miRNA:   3'- gCGGU--CCGGuCGGCA-UAGCAGCUAca -5'
31776 5' -57 NC_006938.1 + 5651 1.07 0.001101
Target:  5'- aCGCCAGGCCAGCCGUAUCGUCGAUGUc -3'
miRNA:   3'- -GCGGUCCGGUCGGCAUAGCAGCUACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.