miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31861 3' -56.8 NC_006938.1 + 16690 0.66 0.661938
Target:  5'- aAUGCauUCCuucuGGGUcCAGGGACgAGCCu -3'
miRNA:   3'- gUACGacAGGc---UCCA-GUCCCUG-UCGG- -5'
31861 3' -56.8 NC_006938.1 + 16272 0.66 0.651157
Target:  5'- aCGUGCcgGagCGcuGGGUCGGcGACAGCCc -3'
miRNA:   3'- -GUACGa-CagGC--UCCAGUCcCUGUCGG- -5'
31861 3' -56.8 NC_006938.1 + 59138 0.67 0.597185
Target:  5'- --aGCUGgCaaAGGUCAGGGugauucCAGCCg -3'
miRNA:   3'- guaCGACaGgcUCCAGUCCCu-----GUCGG- -5'
31861 3' -56.8 NC_006938.1 + 30840 0.68 0.523021
Target:  5'- --aGgaGgucgCCGAGGUCucuGGGGCAcugGCCg -3'
miRNA:   3'- guaCgaCa---GGCUCCAGu--CCCUGU---CGG- -5'
31861 3' -56.8 NC_006938.1 + 20668 0.68 0.521984
Target:  5'- -cUGCUGUuguggcgccgccgCCGuGGUgagaacCAGGGACAGgCCg -3'
miRNA:   3'- guACGACA-------------GGCuCCA------GUCCCUGUC-GG- -5'
31861 3' -56.8 NC_006938.1 + 51912 0.7 0.414847
Target:  5'- --cGCUGcagcagacgcUCUGGGGUCAGGcGGCGGUg -3'
miRNA:   3'- guaCGAC----------AGGCUCCAGUCC-CUGUCGg -5'
31861 3' -56.8 NC_006938.1 + 35671 0.75 0.209772
Target:  5'- gAUGCUGUCCGucGcCAGGGAgGaGCCc -3'
miRNA:   3'- gUACGACAGGCucCaGUCCCUgU-CGG- -5'
31861 3' -56.8 NC_006938.1 + 28259 0.75 0.204368
Target:  5'- aGUGCUGUgUGuAGGgCAGGGGCGGCa -3'
miRNA:   3'- gUACGACAgGC-UCCaGUCCCUGUCGg -5'
31861 3' -56.8 NC_006938.1 + 6967 0.77 0.169379
Target:  5'- --cGCUcugauccGUCCuAGGUCAGGGGCAGCg -3'
miRNA:   3'- guaCGA-------CAGGcUCCAGUCCCUGUCGg -5'
31861 3' -56.8 NC_006938.1 + 37002 1.12 0.000538
Target:  5'- uCAUGCUGUCCGAGGUCAGGGACAGCCg -3'
miRNA:   3'- -GUACGACAGGCUCCAGUCCCUGUCGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.