Results 1 - 14 of 14 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31874 | 3' | -53.7 | NC_006938.1 | + | 12305 | 0.66 | 0.853979 |
Target: 5'- aGAUCUaucgcaGGCGcucCGAGGGGAUCgaGGg -3' miRNA: 3'- gCUAGA------CUGCcu-GCUCCUCUAGgaCC- -5' |
|||||||
31874 | 3' | -53.7 | NC_006938.1 | + | 7329 | 0.66 | 0.845597 |
Target: 5'- -uGUCUGGCuucaucccGGACGA-GAGAccgUCCUGGc -3' miRNA: 3'- gcUAGACUG--------CCUGCUcCUCU---AGGACC- -5' |
|||||||
31874 | 3' | -53.7 | NC_006938.1 | + | 20419 | 0.67 | 0.800612 |
Target: 5'- gGGUUUGGCacaaGAGGAGGUgCCUGGc -3' miRNA: 3'- gCUAGACUGccugCUCCUCUA-GGACC- -5' |
|||||||
31874 | 3' | -53.7 | NC_006938.1 | + | 57748 | 0.68 | 0.785258 |
Target: 5'- aCGGUCggGGCGGACcugacccuggaggugGAGGGGAUCUc-- -3' miRNA: 3'- -GCUAGa-CUGCCUG---------------CUCCUCUAGGacc -5' |
|||||||
31874 | 3' | -53.7 | NC_006938.1 | + | 30099 | 0.68 | 0.781356 |
Target: 5'- uCGGUUcGGCGGAgGcuGGGAGuucugCCUGGg -3' miRNA: 3'- -GCUAGaCUGCCUgC--UCCUCua---GGACC- -5' |
|||||||
31874 | 3' | -53.7 | NC_006938.1 | + | 35652 | 0.68 | 0.761501 |
Target: 5'- cCGAggUGugGcGCGAGGAGAUgCUGu -3' miRNA: 3'- -GCUagACugCcUGCUCCUCUAgGACc -5' |
|||||||
31874 | 3' | -53.7 | NC_006938.1 | + | 31838 | 0.68 | 0.751375 |
Target: 5'- gCGGgagCUGuuccgucgcGCGGuCGAGGGuGUCCUGGa -3' miRNA: 3'- -GCUa--GAC---------UGCCuGCUCCUcUAGGACC- -5' |
|||||||
31874 | 3' | -53.7 | NC_006938.1 | + | 26834 | 0.69 | 0.709807 |
Target: 5'- gCGGUCaUGaACGGcacgaagacagACGAcGAGAUCCUGGc -3' miRNA: 3'- -GCUAG-AC-UGCC-----------UGCUcCUCUAGGACC- -5' |
|||||||
31874 | 3' | -53.7 | NC_006938.1 | + | 19542 | 0.69 | 0.706633 |
Target: 5'- gGAUCgggGacugcgugugccucGCGGACGGGGAGAUggUGGa -3' miRNA: 3'- gCUAGa--C--------------UGCCUGCUCCUCUAggACC- -5' |
|||||||
31874 | 3' | -53.7 | NC_006938.1 | + | 46602 | 0.7 | 0.677817 |
Target: 5'- ---gCUG-CcGACGAGGAGGUCCUGu -3' miRNA: 3'- gcuaGACuGcCUGCUCCUCUAGGACc -5' |
|||||||
31874 | 3' | -53.7 | NC_006938.1 | + | 13213 | 0.7 | 0.667056 |
Target: 5'- cCGGUCcgaGACGGGCGGGcuGAcagUCCUGGc -3' miRNA: 3'- -GCUAGa--CUGCCUGCUCcuCU---AGGACC- -5' |
|||||||
31874 | 3' | -53.7 | NC_006938.1 | + | 31056 | 0.7 | 0.634623 |
Target: 5'- gGA-CUGAUGGACGAGGGcGAaggcggcguccuUCUUGGc -3' miRNA: 3'- gCUaGACUGCCUGCUCCU-CU------------AGGACC- -5' |
|||||||
31874 | 3' | -53.7 | NC_006938.1 | + | 23525 | 0.73 | 0.456872 |
Target: 5'- gGAUCUGACGGGCcaggucGAGGAGcucUCC-GGa -3' miRNA: 3'- gCUAGACUGCCUG------CUCCUCu--AGGaCC- -5' |
|||||||
31874 | 3' | -53.7 | NC_006938.1 | + | 40559 | 1.12 | 0.001377 |
Target: 5'- aCGAUCUGACGGACGAGGAGAUCCUGGa -3' miRNA: 3'- -GCUAGACUGCCUGCUCCUCUAGGACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home