Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31875 | 3' | -57.6 | NC_006938.1 | + | 41391 | 0.66 | 0.61141 |
Target: 5'- cGCCUCGACGGgcucGUCGgccuguGGGUCGUg-- -3' miRNA: 3'- cUGGAGCUGCCa---CAGU------UCCGGCAgga -5' |
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31875 | 3' | -57.6 | NC_006938.1 | + | 54838 | 0.67 | 0.600729 |
Target: 5'- aGAgCUCGACuGUGUUGGuGGCCG-CCg -3' miRNA: 3'- -CUgGAGCUGcCACAGUU-CCGGCaGGa -5' |
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31875 | 3' | -57.6 | NC_006938.1 | + | 59913 | 0.67 | 0.57945 |
Target: 5'- aGugUg-GAUGGUGUCGuacaccAGGCCGUCUUu -3' miRNA: 3'- -CugGagCUGCCACAGU------UCCGGCAGGA- -5' |
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31875 | 3' | -57.6 | NC_006938.1 | + | 39939 | 0.67 | 0.57945 |
Target: 5'- cGGCCUUGGCuGUgacgGUCAGGGuuguguCCGUCCg -3' miRNA: 3'- -CUGGAGCUGcCA----CAGUUCC------GGCAGGa -5' |
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31875 | 3' | -57.6 | NC_006938.1 | + | 10659 | 0.67 | 0.558336 |
Target: 5'- aGCUUCcgGAUGGUGUUgcuGGGaCCGUCCg -3' miRNA: 3'- cUGGAG--CUGCCACAGu--UCC-GGCAGGa -5' |
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31875 | 3' | -57.6 | NC_006938.1 | + | 10712 | 0.67 | 0.54786 |
Target: 5'- cGCCU-GACGGUGUCGGGcGUgGUCa- -3' miRNA: 3'- cUGGAgCUGCCACAGUUC-CGgCAGga -5' |
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31875 | 3' | -57.6 | NC_006938.1 | + | 50315 | 0.67 | 0.54786 |
Target: 5'- cGGCCUggaUGGCGGUGUCGAcaaagccaGCCGgugCCUg -3' miRNA: 3'- -CUGGA---GCUGCCACAGUUc-------CGGCa--GGA- -5' |
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31875 | 3' | -57.6 | NC_006938.1 | + | 35583 | 0.68 | 0.527101 |
Target: 5'- cGACCgcgCGACuGGaggcacUGaUCAAGGCCGUCa- -3' miRNA: 3'- -CUGGa--GCUG-CC------AC-AGUUCCGGCAGga -5' |
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31875 | 3' | -57.6 | NC_006938.1 | + | 4284 | 0.71 | 0.35325 |
Target: 5'- gGAgCUCGGCGGUcagcagggucucgauGUCGGaGCCGUCCg -3' miRNA: 3'- -CUgGAGCUGCCA---------------CAGUUcCGGCAGGa -5' |
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31875 | 3' | -57.6 | NC_006938.1 | + | 45982 | 0.71 | 0.349979 |
Target: 5'- gGACCUCGAagucCGccGUCAgcgaggacaGGGCCGUCCg -3' miRNA: 3'- -CUGGAGCU----GCcaCAGU---------UCCGGCAGGa -5' |
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31875 | 3' | -57.6 | NC_006938.1 | + | 42928 | 0.72 | 0.296262 |
Target: 5'- cAUCUCGAgGGUGUU--GGCUGUCCa -3' miRNA: 3'- cUGGAGCUgCCACAGuuCCGGCAGGa -5' |
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31875 | 3' | -57.6 | NC_006938.1 | + | 12237 | 0.73 | 0.282139 |
Target: 5'- --aCUCGAUGGUGUC---GCCGUCCUc -3' miRNA: 3'- cugGAGCUGCCACAGuucCGGCAGGA- -5' |
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31875 | 3' | -57.6 | NC_006938.1 | + | 14085 | 0.79 | 0.109743 |
Target: 5'- cGugCUCGACcGUGUCAAGGUCGUCgCUc -3' miRNA: 3'- -CugGAGCUGcCACAGUUCCGGCAG-GA- -5' |
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31875 | 3' | -57.6 | NC_006938.1 | + | 40773 | 1.06 | 0.001135 |
Target: 5'- gGACCUCGACGGUGUCAAGGCCGUCCUc -3' miRNA: 3'- -CUGGAGCUGCCACAGUUCCGGCAGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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