miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31912 3' -59.1 NC_006938.1 + 56660 0.66 0.520787
Target:  5'- gGCUGGGGaggcaaggccggGGCCGCUCUGauCCGu-- -3'
miRNA:   3'- gCGACCCUga----------CCGGCGAGAU--GGUguu -5'
31912 3' -59.1 NC_006938.1 + 2446 0.66 0.504338
Target:  5'- aCGCUGgcuGGACgaGGCCGa-CUAUCGCAAg -3'
miRNA:   3'- -GCGAC---CCUGa-CCGGCgaGAUGGUGUU- -5'
31912 3' -59.1 NC_006938.1 + 49887 0.67 0.474128
Target:  5'- gCGCUGGGGgaGGuuGCcacagUGCCGCGc -3'
miRNA:   3'- -GCGACCCUgaCCggCGag---AUGGUGUu -5'
31912 3' -59.1 NC_006938.1 + 26599 0.67 0.425908
Target:  5'- aGCUGGGACUGGCagaGUaCacggGCgGCGAg -3'
miRNA:   3'- gCGACCCUGACCGg--CGaGa---UGgUGUU- -5'
31912 3' -59.1 NC_006938.1 + 18732 0.69 0.330902
Target:  5'- --aUGGGACaGGagaaGCUCUGCCACGAc -3'
miRNA:   3'- gcgACCCUGaCCgg--CGAGAUGGUGUU- -5'
31912 3' -59.1 NC_006938.1 + 55930 0.7 0.30785
Target:  5'- uCGCUGaGGACcugGGCCGCcUUGCCAg-- -3'
miRNA:   3'- -GCGAC-CCUGa--CCGGCGaGAUGGUguu -5'
31912 3' -59.1 NC_006938.1 + 30167 0.71 0.246123
Target:  5'- aGCUGGGACUcGGCaugguccgGCUCUcgacccacccGCCACAc -3'
miRNA:   3'- gCGACCCUGA-CCGg-------CGAGA----------UGGUGUu -5'
31912 3' -59.1 NC_006938.1 + 54053 0.73 0.189949
Target:  5'- aCGgUGGGAggGGCUGCUC-GCCGCAGg -3'
miRNA:   3'- -GCgACCCUgaCCGGCGAGaUGGUGUU- -5'
31912 3' -59.1 NC_006938.1 + 63419 1.06 0.000668
Target:  5'- cCGCUGGGACUGGCCGCUCUACCACAAg -3'
miRNA:   3'- -GCGACCCUGACCGGCGAGAUGGUGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.