Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31939 | 3' | -54.1 | NC_006940.1 | + | 12618 | 0.66 | 0.669389 |
Target: 5'- ---aCGCCUGgguuaucGCCGCAGCuaacgACCa -3' miRNA: 3'- gaagGCGGACaa-----CGGUGUCGua---UGGc -5' |
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31939 | 3' | -54.1 | NC_006940.1 | + | 6465 | 0.68 | 0.522562 |
Target: 5'- --aCCGCg-GUaGCCACGGCA-GCCGg -3' miRNA: 3'- gaaGGCGgaCAaCGGUGUCGUaUGGC- -5' |
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31939 | 3' | -54.1 | NC_006940.1 | + | 38324 | 0.71 | 0.399153 |
Target: 5'- -gUUCGCCUGgucUGCCAUAGCGc-CCGc -3' miRNA: 3'- gaAGGCGGACa--ACGGUGUCGUauGGC- -5' |
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31939 | 3' | -54.1 | NC_006940.1 | + | 19081 | 0.71 | 0.362331 |
Target: 5'- --gCCGCUUGUaccGCCACGGUAagcucUACCGg -3' miRNA: 3'- gaaGGCGGACAa--CGGUGUCGU-----AUGGC- -5' |
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31939 | 3' | -54.1 | NC_006940.1 | + | 35625 | 0.74 | 0.25343 |
Target: 5'- uCUUCCGgugucaucagaaucCCUGUUGCCcguugguuaagcauCGGCGUACCGg -3' miRNA: 3'- -GAAGGC--------------GGACAACGGu-------------GUCGUAUGGC- -5' |
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31939 | 3' | -54.1 | NC_006940.1 | + | 15317 | 0.76 | 0.192339 |
Target: 5'- gCUUCCGCCUGUUG-UGCAGUGUACg- -3' miRNA: 3'- -GAAGGCGGACAACgGUGUCGUAUGgc -5' |
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31939 | 3' | -54.1 | NC_006940.1 | + | 14371 | 1.09 | 0.000878 |
Target: 5'- gCUUCCGCCUGUUGCCACAGCAUACCGu -3' miRNA: 3'- -GAAGGCGGACAACGGUGUCGUAUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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