Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31979 | 5' | -59.4 | NC_006948.1 | + | 4349 | 0.66 | 0.062093 |
Target: 5'- uGGGCAGGCAGCguGggcccgcgaugcugcAGAgGGuCCGcGAa -3' miRNA: 3'- uCCCGUCCGUCGguU---------------UCUaCC-GGC-CU- -5' |
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31979 | 5' | -59.4 | NC_006948.1 | + | 538 | 0.67 | 0.054185 |
Target: 5'- aAGGGCAGGaaguggagggAGUCAGAGAuguacacgacgcuggUGGUCGGu -3' miRNA: 3'- -UCCCGUCCg---------UCGGUUUCU---------------ACCGGCCu -5' |
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31979 | 5' | -59.4 | NC_006948.1 | + | 1476 | 0.67 | 0.051479 |
Target: 5'- gAGGGCGGGCcguccugGGCCGAGcuAUGuGCUGGc -3' miRNA: 3'- -UCCCGUCCG-------UCGGUUUc-UAC-CGGCCu -5' |
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31979 | 5' | -59.4 | NC_006948.1 | + | 5352 | 0.68 | 0.040636 |
Target: 5'- gAGGGCGaguugcagagcGGC-GCCGAAGAaggacgcGGCUGGAa -3' miRNA: 3'- -UCCCGU-----------CCGuCGGUUUCUa------CCGGCCU- -5' |
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31979 | 5' | -59.4 | NC_006948.1 | + | 4994 | 0.7 | 0.028784 |
Target: 5'- gGGGGCGGGCcgcAGCgCAAAGAgGGCagCGGc -3' miRNA: 3'- -UCCCGUCCG---UCG-GUUUCUaCCG--GCCu -5' |
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31979 | 5' | -59.4 | NC_006948.1 | + | 4904 | 1.09 | 0.000009 |
Target: 5'- gAGGGCAGGCAGCCAAAGAUGGCCGGAg -3' miRNA: 3'- -UCCCGUCCGUCGGUUUCUACCGGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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