miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31979 5' -59.4 NC_006948.1 + 4349 0.66 0.062093
Target:  5'- uGGGCAGGCAGCguGggcccgcgaugcugcAGAgGGuCCGcGAa -3'
miRNA:   3'- uCCCGUCCGUCGguU---------------UCUaCC-GGC-CU- -5'
31979 5' -59.4 NC_006948.1 + 538 0.67 0.054185
Target:  5'- aAGGGCAGGaaguggagggAGUCAGAGAuguacacgacgcuggUGGUCGGu -3'
miRNA:   3'- -UCCCGUCCg---------UCGGUUUCU---------------ACCGGCCu -5'
31979 5' -59.4 NC_006948.1 + 1476 0.67 0.051479
Target:  5'- gAGGGCGGGCcguccugGGCCGAGcuAUGuGCUGGc -3'
miRNA:   3'- -UCCCGUCCG-------UCGGUUUc-UAC-CGGCCu -5'
31979 5' -59.4 NC_006948.1 + 5352 0.68 0.040636
Target:  5'- gAGGGCGaguugcagagcGGC-GCCGAAGAaggacgcGGCUGGAa -3'
miRNA:   3'- -UCCCGU-----------CCGuCGGUUUCUa------CCGGCCU- -5'
31979 5' -59.4 NC_006948.1 + 4994 0.7 0.028784
Target:  5'- gGGGGCGGGCcgcAGCgCAAAGAgGGCagCGGc -3'
miRNA:   3'- -UCCCGUCCG---UCG-GUUUCUaCCG--GCCu -5'
31979 5' -59.4 NC_006948.1 + 4904 1.09 0.000009
Target:  5'- gAGGGCAGGCAGCCAAAGAUGGCCGGAg -3'
miRNA:   3'- -UCCCGUCCGUCGGUUUCUACCGGCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.