miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32070 5' -58.7 NC_007016.1 + 17099 0.66 0.785523
Target:  5'- cUGGGccaGUC-CGGACC-CGUCCUG-CCCa -3'
miRNA:   3'- -ACCC---CAGaGUUUGGuGCGGGGCaGGG- -5'
32070 5' -58.7 NC_007016.1 + 50196 0.67 0.729221
Target:  5'- gGGGGUCUCgAAACUgaACuGuCCCCG-CCg -3'
miRNA:   3'- aCCCCAGAG-UUUGG--UG-C-GGGGCaGGg -5'
32070 5' -58.7 NC_007016.1 + 78390 0.67 0.729221
Target:  5'- -cGGGUaaCGcAACCGCGCCCCcuucacucucGUCCUg -3'
miRNA:   3'- acCCCAgaGU-UUGGUGCGGGG----------CAGGG- -5'
32070 5' -58.7 NC_007016.1 + 72104 0.67 0.738859
Target:  5'- cGGGGagaagucaacgUCUCAcucaucgcguuuAugUACGCCUCG-CCCg -3'
miRNA:   3'- aCCCC-----------AGAGU------------UugGUGCGGGGCaGGG- -5'
32070 5' -58.7 NC_007016.1 + 123887 0.67 0.748407
Target:  5'- aGGGccaUCUCAAuagcggugaccACUACGCCgCCGUCgCu -3'
miRNA:   3'- aCCCc--AGAGUU-----------UGGUGCGG-GGCAGgG- -5'
32070 5' -58.7 NC_007016.1 + 129947 0.67 0.748407
Target:  5'- cGaGGGUCUC---CCGCGCggccCCCGggCCCc -3'
miRNA:   3'- aC-CCCAGAGuuuGGUGCG----GGGCa-GGG- -5'
32070 5' -58.7 NC_007016.1 + 14891 0.66 0.757856
Target:  5'- gGGGGUUaUCAGGgCGCGacggugauuaaCCCCaUCCCg -3'
miRNA:   3'- aCCCCAG-AGUUUgGUGC-----------GGGGcAGGG- -5'
32070 5' -58.7 NC_007016.1 + 130170 0.66 0.773668
Target:  5'- --cGGUC-CGGccgagcccggcggcGCCGCGCCCCGacgCCCc -3'
miRNA:   3'- accCCAGaGUU--------------UGGUGCGGGGCa--GGG- -5'
32070 5' -58.7 NC_007016.1 + 130339 0.66 0.785523
Target:  5'- aGGGGggCUgGGGCCcgggGCGCCUCGgcggggccggCCCc -3'
miRNA:   3'- aCCCCa-GAgUUUGG----UGCGGGGCa---------GGG- -5'
32070 5' -58.7 NC_007016.1 + 42613 0.67 0.709711
Target:  5'- -uGGGUCgu-AACUACGCCCUGgacauggacCCCg -3'
miRNA:   3'- acCCCAGaguUUGGUGCGGGGCa--------GGG- -5'
32070 5' -58.7 NC_007016.1 + 121335 0.67 0.699855
Target:  5'- cGGGGUgUCAccaggaAACCGCGUCUC--CCCu -3'
miRNA:   3'- aCCCCAgAGU------UUGGUGCGGGGcaGGG- -5'
32070 5' -58.7 NC_007016.1 + 16831 0.67 0.699855
Target:  5'- aGGcGUCUCAGACguCGCCCCacucuuucGUCgCg -3'
miRNA:   3'- aCCcCAGAGUUUGguGCGGGG--------CAGgG- -5'
32070 5' -58.7 NC_007016.1 + 37712 0.73 0.394307
Target:  5'- aGGuGGUCUCuguuuCCAUaGCCCUGUCCa -3'
miRNA:   3'- aCC-CCAGAGuuu--GGUG-CGGGGCAGGg -5'
32070 5' -58.7 NC_007016.1 + 13228 0.73 0.394307
Target:  5'- -uGGGUcCUCGagGACCACGCCCC--CCCu -3'
miRNA:   3'- acCCCA-GAGU--UUGGUGCGGGGcaGGG- -5'
32070 5' -58.7 NC_007016.1 + 130097 0.72 0.428434
Target:  5'- gGGGGUCccgCGgggGGCCGgggcCGCCCCcggGUCCCg -3'
miRNA:   3'- aCCCCAGa--GU---UUGGU----GCGGGG---CAGGG- -5'
32070 5' -58.7 NC_007016.1 + 59353 0.71 0.511089
Target:  5'- gGGuGGUCUCGAAgUugGUCCaGUCCUu -3'
miRNA:   3'- aCC-CCAGAGUUUgGugCGGGgCAGGG- -5'
32070 5' -58.7 NC_007016.1 + 89967 0.7 0.559784
Target:  5'- aGGGGg---AAGCCGCGa-CCGUCCCg -3'
miRNA:   3'- aCCCCagagUUUGGUGCggGGCAGGG- -5'
32070 5' -58.7 NC_007016.1 + 17384 0.69 0.59964
Target:  5'- cUGGuGGcCgcc-GCCGCGCCCUGcCCCg -3'
miRNA:   3'- -ACC-CCaGaguuUGGUGCGGGGCaGGG- -5'
32070 5' -58.7 NC_007016.1 + 22191 0.69 0.59964
Target:  5'- cUGGGGgcgcguugUCUCGucguggcucgcAAUCAcCGCCCCGUCUg -3'
miRNA:   3'- -ACCCC--------AGAGU-----------UUGGU-GCGGGGCAGGg -5'
32070 5' -58.7 NC_007016.1 + 18880 0.67 0.696888
Target:  5'- cGGGGUCgcgcguuucgCAAACaCACGagguuucccagacaCCCCcUCCCg -3'
miRNA:   3'- aCCCCAGa---------GUUUG-GUGC--------------GGGGcAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.