miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32093 3' -59.4 NC_007016.1 + 76661 0.66 0.780604
Target:  5'- cCUG-CCGGCGCcGCCGCCgCUgcgacccgAGGu -3'
miRNA:   3'- -GGCgGGCCGUGcCGGCGG-GAaaa-----UCC- -5'
32093 3' -59.4 NC_007016.1 + 116306 0.66 0.777893
Target:  5'- cCCGCgaucgcaccuuuggCCGGC-CGGCCucuGCCCggccaccgAGGa -3'
miRNA:   3'- -GGCG--------------GGCCGuGCCGG---CGGGaaaa----UCC- -5'
32093 3' -59.4 NC_007016.1 + 107334 0.66 0.771523
Target:  5'- aUGuCCCGGguUGuGCUGCCCa--UAGGg -3'
miRNA:   3'- gGC-GGGCCguGC-CGGCGGGaaaAUCC- -5'
32093 3' -59.4 NC_007016.1 + 130058 0.66 0.771523
Target:  5'- cCCGCgCCGcGCGCcgGGCCGCUUUcggUUcgcGGGg -3'
miRNA:   3'- -GGCG-GGC-CGUG--CCGGCGGGAa--AA---UCC- -5'
32093 3' -59.4 NC_007016.1 + 117526 0.66 0.768776
Target:  5'- gCGCCgaGGCuaaacagcgcgcagGCGGCCGCCacca-GGGa -3'
miRNA:   3'- gGCGGg-CCG--------------UGCCGGCGGgaaaaUCC- -5'
32093 3' -59.4 NC_007016.1 + 123609 0.66 0.762324
Target:  5'- gCCGUcgaggccaCCGGCcguGGCCGCCCUg----- -3'
miRNA:   3'- -GGCG--------GGCCGug-CCGGCGGGAaaaucc -5'
32093 3' -59.4 NC_007016.1 + 116932 0.66 0.762324
Target:  5'- aCGCCgGuGC-CGGUCGCCaagagGGGg -3'
miRNA:   3'- gGCGGgC-CGuGCCGGCGGgaaaaUCC- -5'
32093 3' -59.4 NC_007016.1 + 68542 0.66 0.762324
Target:  5'- uCCGCCaucuagCGGuCACGGaUCGCCUUga-AGGa -3'
miRNA:   3'- -GGCGG------GCC-GUGCC-GGCGGGAaaaUCC- -5'
32093 3' -59.4 NC_007016.1 + 120128 0.66 0.762324
Target:  5'- uCCGCCgCGcagcGCGCGGCCGCUg------- -3'
miRNA:   3'- -GGCGG-GC----CGUGCCGGCGGgaaaaucc -5'
32093 3' -59.4 NC_007016.1 + 129937 0.66 0.756752
Target:  5'- gCGCCCGgggcgagggucucccGCGCGGCCcccggGCCCccgagcGGGg -3'
miRNA:   3'- gGCGGGC---------------CGUGCCGG-----CGGGaaaa--UCC- -5'
32093 3' -59.4 NC_007016.1 + 129875 0.66 0.753016
Target:  5'- gCGCCCGGCGgGGgCC-CCCa------ -3'
miRNA:   3'- gGCGGGCCGUgCC-GGcGGGaaaaucc -5'
32093 3' -59.4 NC_007016.1 + 67527 0.67 0.732194
Target:  5'- aCCauuaCCGGCACGGCCgagaagaggcGCCCUgucgugacuGGa -3'
miRNA:   3'- -GGcg--GGCCGUGCCGG----------CGGGAaaau-----CC- -5'
32093 3' -59.4 NC_007016.1 + 18684 0.67 0.724518
Target:  5'- gCGCCgCGGUuCGGCgGCCCg------ -3'
miRNA:   3'- gGCGG-GCCGuGCCGgCGGGaaaaucc -5'
32093 3' -59.4 NC_007016.1 + 17379 0.67 0.705128
Target:  5'- aUCGCCCcgaGCGGCCGCUCccugUUGGa -3'
miRNA:   3'- -GGCGGGccgUGCCGGCGGGaa--AAUCc -5'
32093 3' -59.4 NC_007016.1 + 115729 0.67 0.705128
Target:  5'- gUCGCCgCGcGUAcccauCGGCCGCUCUUUggcgccgGGGu -3'
miRNA:   3'- -GGCGG-GC-CGU-----GCCGGCGGGAAAa------UCC- -5'
32093 3' -59.4 NC_007016.1 + 5828 0.67 0.705128
Target:  5'- aCGCCCGGCGau-CUGCaCCUgcUGGGu -3'
miRNA:   3'- gGCGGGCCGUgccGGCG-GGAaaAUCC- -5'
32093 3' -59.4 NC_007016.1 + 121144 0.67 0.685504
Target:  5'- -gGUgUGGUggcaGCGGUCGCCgUUUUAGGc -3'
miRNA:   3'- ggCGgGCCG----UGCCGGCGGgAAAAUCC- -5'
32093 3' -59.4 NC_007016.1 + 12615 0.67 0.685504
Target:  5'- aCCGCCUGGCACGcGaCCuGUCCgauaUAGu -3'
miRNA:   3'- -GGCGGGCCGUGC-C-GG-CGGGaaa-AUCc -5'
32093 3' -59.4 NC_007016.1 + 47541 0.68 0.675626
Target:  5'- aUCGCCUGGCugGuGCU-CCCgg--GGGg -3'
miRNA:   3'- -GGCGGGCCGugC-CGGcGGGaaaaUCC- -5'
32093 3' -59.4 NC_007016.1 + 100061 0.68 0.655774
Target:  5'- aUCGCCUGG-AgGGCCGCCgCUUcucGGa -3'
miRNA:   3'- -GGCGGGCCgUgCCGGCGG-GAAaauCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.