Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32094 | 3' | -49.4 | NC_007016.1 | + | 8502 | 0.66 | 0.997596 |
Target: 5'- cUAUCAgggCACCCGCGUcCucGAAugucCACGGc -3' miRNA: 3'- -GUAGUa--GUGGGUGCAuGu-CUU----GUGCC- -5' |
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32094 | 3' | -49.4 | NC_007016.1 | + | 123716 | 0.66 | 0.997142 |
Target: 5'- -uUCA-CGCCCGCGcaggaacucUACAGAAaggacUACGGg -3' miRNA: 3'- guAGUaGUGGGUGC---------AUGUCUU-----GUGCC- -5' |
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32094 | 3' | -49.4 | NC_007016.1 | + | 104389 | 0.66 | 0.997142 |
Target: 5'- gGUCGuuucUCGCCUugGUGuuGGaccGCGCGGa -3' miRNA: 3'- gUAGU----AGUGGGugCAUguCU---UGUGCC- -5' |
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32094 | 3' | -49.4 | NC_007016.1 | + | 9091 | 0.66 | 0.99662 |
Target: 5'- aCGUCcgUGCCuUGCGUACAGuGCcuGCGGg -3' miRNA: 3'- -GUAGuaGUGG-GUGCAUGUCuUG--UGCC- -5' |
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32094 | 3' | -49.4 | NC_007016.1 | + | 119912 | 0.67 | 0.995338 |
Target: 5'- aCAUCGUU-CCgGCauaGUAuCGGGACACGGg -3' miRNA: 3'- -GUAGUAGuGGgUG---CAU-GUCUUGUGCC- -5' |
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32094 | 3' | -49.4 | NC_007016.1 | + | 124743 | 0.67 | 0.995338 |
Target: 5'- cCAUaCAUCGCCCccaaccgaucACcagGCAGGACGCGa -3' miRNA: 3'- -GUA-GUAGUGGG----------UGca-UGUCUUGUGCc -5' |
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32094 | 3' | -49.4 | NC_007016.1 | + | 13699 | 0.67 | 0.995115 |
Target: 5'- --aCGUCACCCACGUccuccaGCAGGcccucaagaacaccGC-CGGc -3' miRNA: 3'- guaGUAGUGGGUGCA------UGUCU--------------UGuGCC- -5' |
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32094 | 3' | -49.4 | NC_007016.1 | + | 79240 | 0.67 | 0.994562 |
Target: 5'- aCAUCugCGCCCACGggUAGccGCAUGGg -3' miRNA: 3'- -GUAGuaGUGGGUGCauGUCu-UGUGCC- -5' |
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32094 | 3' | -49.4 | NC_007016.1 | + | 115879 | 0.67 | 0.993778 |
Target: 5'- -uUCGUgACCCGCGggugacccggcgaugGCAccgcGGGCGCGGg -3' miRNA: 3'- guAGUAgUGGGUGCa--------------UGU----CUUGUGCC- -5' |
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32094 | 3' | -49.4 | NC_007016.1 | + | 95656 | 0.67 | 0.993685 |
Target: 5'- uCGUCAauuUCugCCGCGcggGCGGAuaACGGu -3' miRNA: 3'- -GUAGU---AGugGGUGCa--UGUCUugUGCC- -5' |
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32094 | 3' | -49.4 | NC_007016.1 | + | 95817 | 0.67 | 0.992698 |
Target: 5'- cCGUUAUcCGCCCGCGcgGCAGAAauugACGa -3' miRNA: 3'- -GUAGUA-GUGGGUGCa-UGUCUUg---UGCc -5' |
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32094 | 3' | -49.4 | NC_007016.1 | + | 44203 | 0.68 | 0.992049 |
Target: 5'- cCcgCGUCgACCCGCGUAUgaaauguugaauguuAGAuugcguccGCACGGg -3' miRNA: 3'- -GuaGUAG-UGGGUGCAUG---------------UCU--------UGUGCC- -5' |
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32094 | 3' | -49.4 | NC_007016.1 | + | 38903 | 0.68 | 0.988985 |
Target: 5'- --cCGUCccaacgcgcaGCCCACGUugacgaugauCGGGACGCGGu -3' miRNA: 3'- guaGUAG----------UGGGUGCAu---------GUCUUGUGCC- -5' |
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32094 | 3' | -49.4 | NC_007016.1 | + | 126011 | 0.68 | 0.985788 |
Target: 5'- cCGUCAUgGCCCGCa---GGAGCuACGGc -3' miRNA: 3'- -GUAGUAgUGGGUGcaugUCUUG-UGCC- -5' |
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32094 | 3' | -49.4 | NC_007016.1 | + | 14082 | 0.68 | 0.985788 |
Target: 5'- gCAUCGUgGCCUuCGaUAUAGAguGCAUGGg -3' miRNA: 3'- -GUAGUAgUGGGuGC-AUGUCU--UGUGCC- -5' |
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32094 | 3' | -49.4 | NC_007016.1 | + | 49024 | 0.69 | 0.983944 |
Target: 5'- -uUCGUUAuCCCACGUcgccACGGGaaaACAUGGa -3' miRNA: 3'- guAGUAGU-GGGUGCA----UGUCU---UGUGCC- -5' |
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32094 | 3' | -49.4 | NC_007016.1 | + | 78904 | 0.69 | 0.983944 |
Target: 5'- uCGUCGUCuGCCCAaaacaGUcCAGAAUACGu -3' miRNA: 3'- -GUAGUAG-UGGGUg----CAuGUCUUGUGCc -5' |
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32094 | 3' | -49.4 | NC_007016.1 | + | 42873 | 0.69 | 0.983944 |
Target: 5'- gGUCAguagccuuacgCACCCACGUGgAaucAACGCGGa -3' miRNA: 3'- gUAGUa----------GUGGGUGCAUgUc--UUGUGCC- -5' |
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32094 | 3' | -49.4 | NC_007016.1 | + | 62111 | 0.69 | 0.98375 |
Target: 5'- uCGUCGUCACCguugcagucccugCGCGaugcgugccucuUACAGGcgGCACGGa -3' miRNA: 3'- -GUAGUAGUGG-------------GUGC------------AUGUCU--UGUGCC- -5' |
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32094 | 3' | -49.4 | NC_007016.1 | + | 72860 | 0.69 | 0.977323 |
Target: 5'- aCAUUAUUaauuuccgcaGCCCACGUgACAGAGuCAuCGGa -3' miRNA: 3'- -GUAGUAG----------UGGGUGCA-UGUCUU-GU-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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