miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32101 3' -53.1 NC_007016.1 + 5735 0.66 0.964195
Target:  5'- uUCGCACcUCACGGGcAUAGGa----- -3'
miRNA:   3'- gAGCGUGuGGUGCCC-UGUCCauuucu -5'
32101 3' -53.1 NC_007016.1 + 7860 0.66 0.960669
Target:  5'- gUCGC-CGCCACGGGGCGu------- -3'
miRNA:   3'- gAGCGuGUGGUGCCCUGUccauuucu -5'
32101 3' -53.1 NC_007016.1 + 27911 0.66 0.952916
Target:  5'- uUCGCACAgCAC----CAGGUGAAGAa -3'
miRNA:   3'- gAGCGUGUgGUGcccuGUCCAUUUCU- -5'
32101 3' -53.1 NC_007016.1 + 23927 0.66 0.952916
Target:  5'- -cCGCGa--CGCGGGGCAGGUugcguAGGu -3'
miRNA:   3'- gaGCGUgugGUGCCCUGUCCAuu---UCU- -5'
32101 3' -53.1 NC_007016.1 + 102973 0.66 0.952916
Target:  5'- gCUU-CGCGCCACGaGGACGGccGGAGAa -3'
miRNA:   3'- -GAGcGUGUGGUGC-CCUGUCcaUUUCU- -5'
32101 3' -53.1 NC_007016.1 + 118729 0.67 0.948678
Target:  5'- -cCGUgACACCACGGGcCcGGUcGAGGg -3'
miRNA:   3'- gaGCG-UGUGGUGCCCuGuCCAuUUCU- -5'
32101 3' -53.1 NC_007016.1 + 130323 0.67 0.948678
Target:  5'- uCUC-CGCGCCGcCGGGAgGGGggcuGGGGc -3'
miRNA:   3'- -GAGcGUGUGGU-GCCCUgUCCau--UUCU- -5'
32101 3' -53.1 NC_007016.1 + 68485 0.67 0.93448
Target:  5'- -aCGCGCAUCGCGGGcgguccCGGGaaUGGGGGg -3'
miRNA:   3'- gaGCGUGUGGUGCCCu-----GUCC--AUUUCU- -5'
32101 3' -53.1 NC_007016.1 + 117554 0.67 0.929245
Target:  5'- -cCGC-CACCA-GGGACGGGgAAAGc -3'
miRNA:   3'- gaGCGuGUGGUgCCCUGUCCaUUUCu -5'
32101 3' -53.1 NC_007016.1 + 106636 0.67 0.929245
Target:  5'- aUUGCACuuuCCACaGGACAGGgacgauauAGAc -3'
miRNA:   3'- gAGCGUGu--GGUGcCCUGUCCauu-----UCU- -5'
32101 3' -53.1 NC_007016.1 + 115501 0.67 0.923758
Target:  5'- -aUGCGCACCAUGGGuACAaugGGUAc--- -3'
miRNA:   3'- gaGCGUGUGGUGCCC-UGU---CCAUuucu -5'
32101 3' -53.1 NC_007016.1 + 13530 0.68 0.918018
Target:  5'- -aCGUACGCgGC-GGACAGGUGcgccGAGGu -3'
miRNA:   3'- gaGCGUGUGgUGcCCUGUCCAU----UUCU- -5'
32101 3' -53.1 NC_007016.1 + 22046 0.68 0.905784
Target:  5'- aCUCGCgACGCCACaucuGGACGGGa----- -3'
miRNA:   3'- -GAGCG-UGUGGUGc---CCUGUCCauuucu -5'
32101 3' -53.1 NC_007016.1 + 108940 0.68 0.899293
Target:  5'- -cCGgACAUCACGuGAguGGUAAAGAu -3'
miRNA:   3'- gaGCgUGUGGUGCcCUguCCAUUUCU- -5'
32101 3' -53.1 NC_007016.1 + 18569 0.68 0.899293
Target:  5'- -aCGUACACCACGGGAguGa------ -3'
miRNA:   3'- gaGCGUGUGGUGCCCUguCcauuucu -5'
32101 3' -53.1 NC_007016.1 + 69059 0.68 0.89049
Target:  5'- -aUGCACAauggacagagcaauaACGGGACAGGUGAAa- -3'
miRNA:   3'- gaGCGUGUgg-------------UGCCCUGUCCAUUUcu -5'
32101 3' -53.1 NC_007016.1 + 107073 0.7 0.847251
Target:  5'- --aGC-CACCACcuGGGACcaaacAGGUAGAGAa -3'
miRNA:   3'- gagCGuGUGGUG--CCCUG-----UCCAUUUCU- -5'
32101 3' -53.1 NC_007016.1 + 16103 0.7 0.847251
Target:  5'- uCUgGUACACCGCcagguGGGGCAGGUu--GGu -3'
miRNA:   3'- -GAgCGUGUGGUG-----CCCUGUCCAuuuCU- -5'
32101 3' -53.1 NC_007016.1 + 62818 0.7 0.847251
Target:  5'- -cCGCACG-CACGGGAC-GGUGAGu- -3'
miRNA:   3'- gaGCGUGUgGUGCCCUGuCCAUUUcu -5'
32101 3' -53.1 NC_007016.1 + 130202 0.7 0.838938
Target:  5'- -gCGCGCGgCGCGGGGCGGccGGGGGc -3'
miRNA:   3'- gaGCGUGUgGUGCCCUGUCcaUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.