Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 32107 | 3' | -54.8 | NC_007016.1 | + | 126993 | 0.66 | 0.933123 |
|
Target: 5'- -aUGGAUGAGCgguUCAucGCCUGCCC-CGg -3' miRNA: 3'- acACCUGCUUG---GGU--UGGAUGGGaGCa -5' |
|||||||
| 32107 | 3' | -54.8 | NC_007016.1 | + | 16031 | 0.66 | 0.910703 |
|
Target: 5'- cGUGGACGcGCCCGGg--GCCCUaaaGUc -3' miRNA: 3'- aCACCUGCuUGGGUUggaUGGGAg--CA- -5' |
|||||||
| 32107 | 3' | -54.8 | NC_007016.1 | + | 27749 | 0.66 | 0.910703 |
|
Target: 5'- cGUGGACGuGgUCAGCCUACCaaaGa -3' miRNA: 3'- aCACCUGCuUgGGUUGGAUGGgagCa -5' |
|||||||
| 32107 | 3' | -54.8 | NC_007016.1 | + | 107466 | 0.67 | 0.884394 |
|
Target: 5'- -cUGGAUGAGCgUGGCCUggGCCCUuCGg -3' miRNA: 3'- acACCUGCUUGgGUUGGA--UGGGA-GCa -5' |
|||||||
| 32107 | 3' | -54.8 | NC_007016.1 | + | 23765 | 0.68 | 0.838145 |
|
Target: 5'- ---cGGCGAACCUAcgcaACCUGCCCcgCGUc -3' miRNA: 3'- acacCUGCUUGGGU----UGGAUGGGa-GCA- -5' |
|||||||
| 32107 | 3' | -54.8 | NC_007016.1 | + | 122927 | 0.7 | 0.746589 |
|
Target: 5'- --cGGACGGGCgCC-ACCUGgCCUCGc -3' miRNA: 3'- acaCCUGCUUG-GGuUGGAUgGGAGCa -5' |
|||||||
| 32107 | 3' | -54.8 | NC_007016.1 | + | 90934 | 1.07 | 0.004417 |
|
Target: 5'- uUGUGGACGAACCCAACCUACCCUCGUu -3' miRNA: 3'- -ACACCUGCUUGGGUUGGAUGGGAGCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home