miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3295 5' -61.1 NC_001545.1 + 4451 0.66 0.095036
Target:  5'- -uUCCCCGacugcugggcggccCGCCUGCGCGCGgGg--- -3'
miRNA:   3'- ucGGGGGC--------------GCGGACGCGCGUgUauac -5'
3295 5' -61.1 NC_001545.1 + 493 0.66 0.090065
Target:  5'- gGGCCgCUcgguGCGCCacgcaGCGCGCACAc--- -3'
miRNA:   3'- -UCGGgGG----CGCGGa----CGCGCGUGUauac -5'
3295 5' -61.1 NC_001545.1 + 3693 0.66 0.090065
Target:  5'- gAGaCCgUgggaUGCGCCUGUuCGCGCGUGUGg -3'
miRNA:   3'- -UC-GGgG----GCGCGGACGcGCGUGUAUAC- -5'
3295 5' -61.1 NC_001545.1 + 978 0.66 0.087256
Target:  5'- cGGaCCCgCGCGCUggguuggagGCuGCGCACGUGg- -3'
miRNA:   3'- -UC-GGGgGCGCGGa--------CG-CGCGUGUAUac -5'
3295 5' -61.1 NC_001545.1 + 7095 0.66 0.08698
Target:  5'- gAGCCgCCCGCucacgucGUCcGCGCGUACAa--- -3'
miRNA:   3'- -UCGG-GGGCG-------CGGaCGCGCGUGUauac -5'
3295 5' -61.1 NC_001545.1 + 3006 0.66 0.086157
Target:  5'- cAGCgagCCCCGCGCCgacgagcacggagGCGUGCGuCAgcGUGg -3'
miRNA:   3'- -UCG---GGGGCGCGGa------------CGCGCGU-GUa-UAC- -5'
3295 5' -61.1 NC_001545.1 + 7435 0.66 0.084532
Target:  5'- cGCUgCCGCagccccCCUGUGCGCACGg--- -3'
miRNA:   3'- uCGGgGGCGc-----GGACGCGCGUGUauac -5'
3295 5' -61.1 NC_001545.1 + 6042 0.67 0.079324
Target:  5'- -aCCCCCaGCuUCUGCGgGCACGUcgGc -3'
miRNA:   3'- ucGGGGG-CGcGGACGCgCGUGUAuaC- -5'
3295 5' -61.1 NC_001545.1 + 3568 0.67 0.079071
Target:  5'- gGGCaCCCggcacucguguagGCGCCgcagGCGCGCGCAg--- -3'
miRNA:   3'- -UCGgGGG-------------CGCGGa---CGCGCGUGUauac -5'
3295 5' -61.1 NC_001545.1 + 1954 0.67 0.076836
Target:  5'- cGCCCCCGUcgGCCcagGgGCGCuCGgGUGg -3'
miRNA:   3'- uCGGGGGCG--CGGa--CgCGCGuGUaUAC- -5'
3295 5' -61.1 NC_001545.1 + 3517 0.67 0.076836
Target:  5'- aGGCUgCgCGCGCCUGCG-GCGCcUAc- -3'
miRNA:   3'- -UCGGgG-GCGCGGACGCgCGUGuAUac -5'
3295 5' -61.1 NC_001545.1 + 4647 0.67 0.074423
Target:  5'- uGGgCCUCGCGCacgGUGUauGCGCGUAUGc -3'
miRNA:   3'- -UCgGGGGCGCGga-CGCG--CGUGUAUAC- -5'
3295 5' -61.1 NC_001545.1 + 1925 0.67 0.074423
Target:  5'- cGCCCCUGgGCCgacggGgGCGCcagaGCGUGg- -3'
miRNA:   3'- uCGGGGGCgCGGa----CgCGCG----UGUAUac -5'
3295 5' -61.1 NC_001545.1 + 888 0.67 0.072083
Target:  5'- gGGCaCCaggCGCGCgUGCGCGC-CGUGc- -3'
miRNA:   3'- -UCG-GGg--GCGCGgACGCGCGuGUAUac -5'
3295 5' -61.1 NC_001545.1 + 8159 0.68 0.063412
Target:  5'- uGCCgCCGCGCCUGuCGcCGcCGCGg--- -3'
miRNA:   3'- uCGGgGGCGCGGAC-GC-GC-GUGUauac -5'
3295 5' -61.1 NC_001545.1 + 2211 0.68 0.059462
Target:  5'- -cCCCCCGcCGCCgcgcCGCGCACGg--- -3'
miRNA:   3'- ucGGGGGC-GCGGac--GCGCGUGUauac -5'
3295 5' -61.1 NC_001545.1 + 6302 0.68 0.058325
Target:  5'- cGCCCCCGCGUacgcgguaaguuCGCGCACGa--- -3'
miRNA:   3'- uCGGGGGCGCGgac---------GCGCGUGUauac -5'
3295 5' -61.1 NC_001545.1 + 7815 0.68 0.055752
Target:  5'- gGGCCgaUGCGCCUGCGC-CACGg--- -3'
miRNA:   3'- -UCGGggGCGCGGACGCGcGUGUauac -5'
3295 5' -61.1 NC_001545.1 + 5325 0.71 0.036575
Target:  5'- gAGCUCCCGCGCggccacgcccauCUGCGUGUagACAUcaGUGa -3'
miRNA:   3'- -UCGGGGGCGCG------------GACGCGCG--UGUA--UAC- -5'
3295 5' -61.1 NC_001545.1 + 2310 0.71 0.036575
Target:  5'- cAGCCcgCCCGCGCCacccCGCGCugGUGa- -3'
miRNA:   3'- -UCGG--GGGCGCGGac--GCGCGugUAUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.