miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3296 3' -57.6 NC_001545.1 + 266 0.66 0.157609
Target:  5'- --cCGCCgCCAuUGGAUCGagUGGGGCc -3'
miRNA:   3'- gauGCGG-GGU-GCCUGGUaaACCCCGu -5'
3296 3' -57.6 NC_001545.1 + 5453 0.67 0.130752
Target:  5'- --gUGUCCCugGGGCCGag-GGcGGCGu -3'
miRNA:   3'- gauGCGGGGugCCUGGUaaaCC-CCGU- -5'
3296 3' -57.6 NC_001545.1 + 3778 0.67 0.126708
Target:  5'- --gUGCCCCAaaUGGuCCG--UGGGGCGu -3'
miRNA:   3'- gauGCGGGGU--GCCuGGUaaACCCCGU- -5'
3296 3' -57.6 NC_001545.1 + 9178 0.68 0.115262
Target:  5'- -aGCGaCCCCuggcauccacCGGGCCccUUGGGGCu -3'
miRNA:   3'- gaUGC-GGGGu---------GCCUGGuaAACCCCGu -5'
3296 3' -57.6 NC_001545.1 + 2204 0.69 0.101499
Target:  5'- -gACGCggCCGCGGACUGgcgGGGGCc -3'
miRNA:   3'- gaUGCGg-GGUGCCUGGUaaaCCCCGu -5'
3296 3' -57.6 NC_001545.1 + 3719 0.69 0.101499
Target:  5'- -gGCGCauCCCACGGucuCCAUcagGGGGUc -3'
miRNA:   3'- gaUGCG--GGGUGCCu--GGUAaa-CCCCGu -5'
3296 3' -57.6 NC_001545.1 + 3121 0.7 0.073573
Target:  5'- ---aGCCCCGCGGauGCCAg--GGGuGCGa -3'
miRNA:   3'- gaugCGGGGUGCC--UGGUaaaCCC-CGU- -5'
3296 3' -57.6 NC_001545.1 + 1956 0.7 0.073573
Target:  5'- -gGCGCCCCcguCGGcCCA---GGGGCGc -3'
miRNA:   3'- gaUGCGGGGu--GCCuGGUaaaCCCCGU- -5'
3296 3' -57.6 NC_001545.1 + 8054 0.73 0.043602
Target:  5'- -cGCGUCCCAUGGggcucACCAguucGGGGCAg -3'
miRNA:   3'- gaUGCGGGGUGCC-----UGGUaaa-CCCCGU- -5'
3296 3' -57.6 NC_001545.1 + 1923 0.77 0.019668
Target:  5'- -aGCGCCCCugGG-CCGacgGGGGCGc -3'
miRNA:   3'- gaUGCGGGGugCCuGGUaaaCCCCGU- -5'
3296 3' -57.6 NC_001545.1 + 3813 1.08 4.8e-05
Target:  5'- aCUACGCCCCACGGACCAUUUGGGGCAc -3'
miRNA:   3'- -GAUGCGGGGUGCCUGGUAAACCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.